IMGT/JunctionAnalysis reference directory releases

IMGT/JunctionAnalysis reference directory releases

http://www.imgt.org

Citing IMGT/JunctionAnalysis:
Yousfi Monod, M. et al., Bioinformatics, 20, i379-i385 (2004). PMID: 15262823.

Giudicelli, V., Lefranc, M.-P., Cold Spring Harb Protoc. 2011 Jun 1;2011(6). pii: pdb.prot5634. doi: 10.1101/pdb.prot5634.
PMID: 21632777 Abstract also in IMGT booklet with generous provision from Cold Spring Harbor (CSH) Protocols

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IMGT/JunctionAnalysis programme version: 2.1.0 (29 November 2011) - IMGT/JunctionAnalysis reference directory release: 201211-1 (12 March 2012)

Release 201211-1 (12 March 2012)
- Update of IMGT reference sequence for :
  - Mus musculus TRAJ42*02,
  - Bos taurus TRGV8-3*02,
  - Bos taurus TRGJ1-2*02,
  - Bos taurus TRGJ2-1*01,
  - Bos taurus TRGJ2-1*02.
Release 201209-4 (1 March 2012)
- The short name of Canis lupus familiaris (Dog) is encoded on 9 characters. For example: Canlupfam TRGV2-2*01.

Release 201208-4 (23 February 2012)

Addition of a new species: Rhesus Monkey (Macaca mulatta):
- Addition of the Macaca mulatta TRBV genes and alleles : TRBV1-1*01, TRBV10-1*01, TRBV10-2*01, TRBV10-3*01, TRBV11-1*01, TRBV11-2*01, TRBV11-3*01, TRBV12-1*01, TRBV12-2*01, TRBV12-3*01, TRBV12-4*01, TRBV13*01, TRBV14*01, TRBV15*01, TRBV16*01, TRBV18*01, TRBV19*01, TRBV2-1*01, TRBV2-2*01, TRBV2-3*01, TRBV20-1*01, TRBV21-1*01, TRBV22-1*01, TRBV23-1*01, TRBV24-1*01, TRBV25-1*01, TRBV27*01, TRBV28*01, TRBV29*01, TRBV3-1*01, TRBV3-2*01, TRBV3-3*01, TRBV3-4*01, TRBV30*01, TRBV4-1*01, TRBV4-2*01, TRBV4-3*01, TRBV5-1*01, TRBV5-10*01, TRBV5-2*01, TRBV5-3*01, TRBV5-4*01, TRBV5-5*01, TRBV5-6*01, TRBV5-7*01, TRBV5-8*01, TRBV5-9*01, TRBV6-1*01, TRBV6-2*01, TRBV6-3*01, TRBV6-4*01, TRBV6-6*01, TRBV6-7*01, TRBV7-10*01, TRBV7-2*01, TRBV7-3*01, TRBV7-4*01, TRBV7-5*01, TRBV7-6*01, TRBV7-7*01, TRBV7-9*01, TRBV9-1*01
- Addition of the Macaca mulatta TRBD genes and alleles : TRBD1*01, TRBD2*01
- Addition of the Macaca mulatta TRBJ genes and alleles : TRBJ1-1*01, TRBJ1-2*01, TRBJ1-3*01, TRBJ1-4*01, TRBJ1-5*01, TRBJ1-6*01, TRBJ1-6*02, TRBJ2-1*01, TRBJ2-1*02, TRBJ2-2*01, TRBJ2-2P*01, TRBJ2-2P*02, TRBJ2-3*01, TRBJ2-4*01, TRBJ2-5*01, TRBJ2-6*01, TRBJ2-7*01
Release 201201-5 (6 January 2012)
- Addition of the Homo sapiens IGHV3-11*05 gene and allele.
Release 201148-5 (2 December 2011)
- Addition of the Mus musculus IGKV14-126*01 gene and allele.
Release 201145-2 (8 November 2011)
- Addition of the Mus musculus IGHV11-1*02 gene and allele.
- Addition of the Oryctolagus cuniculus IGHV1S69*01 gene and allele.
Release 201139-5 (30 September 2011)
- Addition of the Bos taurus TRGV genes and alleles: TRGV1-1*01, TRGV1-1*02, TRGV1-1*03, TRGV2-1*01, TRGV3-1*01, TRGV3-1*02, TRGV3-2*01, TRGV3-2*02, TRGV5-1*01, TRGV5-1*03, TRGV5-1*04, TRGV5-1*05, TRGV5-2*01, TRGV6-1*01, TRGV6-2*01, TRGV7-1*01, TRGV7-1*02, TRGV8-1*01, TRGV8-2*01, TRGV8-3*01, TRGV8-3*02, TRGV8-4*01, TRGV9-1*01, TRGV9-2*01, TRGV10-1*01.
  Addition of the Bos taurus TRGJ genes and alleles: TRGJ1-1*01, TRGJ1-2*01, TRGJ1-2*02, TRGJ1-2*03, TRGJ2-1*01, TRGJ2-1*02, TRGJ2-1*03, TRGJ2-2*01, TRGJ2-2*02, TRGJ3-1*01, TRGJ3-1*02, TRGJ4-1*01, TRGJ4-2*01, TRGJ5-1*01, TRGJ6-1*01.
Release 201135-3 (31 August 2011)
- The sequence of Mus musculus TRAV12D-3*01 gene and allele has been updated.
  The Mus musculus TRAV12D-3*04 gene and allele has been removed.

Release 201126-1 (27 June 2011)

Addition of 3 Mus musculus IGHD alleles: IGHD2-9*02, IGHD2-10*02 and IGHD2-11*02.
Addition of 1 Mus musculus IGHJ alleles: IGHJ2*02 (the reference sequence is S73821, note that S77041 became the reference sequence of IGHJ2*03).
Addition of a new species: Zebrafish (Danio rerio):
- Addition of 41 IGHV genes and alleles, 7 IGHD, and 7 IGHJ.
- Addition of 11 IGIV genes and alleles and 8 IGHJ.
Release 201117-5 (29 April 2011)
- Addition of the Mus musculus IGKV20-101-2*01 gene and allele.
Release 201110-1 (7 March 2011)
Addition of the Homo sapiens IGHV3-NL1 gene and 31 Homo sapiens IGHV alleles sequenced from Papua (New Guinea): IGHV1-2*05, IGHV3-21*03, IGHV3/OR16-10*03, IGHV1-8*02, IGHV1-18*03, IGHV3-7*03, IGHV3-9*02, IGHV3-11*04, IGHV3-13*04, IGHV3-21*04, IGHV3-25*04, IGHV3-33*06, IGHV3-48*04, IGHV3-53*04, IGHV3-NL1*01, IGHV4-28*06, IGHV4-30-2*05, IGHV7-4-1*04, IGHV7-4-1*05, IGHV1/OR15-1*03, IGHV1/OR15-1*04, IGHV1/OR15-2*02, IGHV1/OR15-2*03, IGHV3/OR15-7*05, IGHV3/OR16-6*02, IGHV3/OR16-8*02, IGHV3-25*05, IGHV3-71*02, IGHV3-71*03, IGHV4/OR15-8*03, IGHV7-34-1*02.
Release 201038-4 (23 September 2010)
Addition of 54 new Mus musculus TRAV genes and alleles resulting from the expertise of the triplicated zone of the TRAV locus in the Mus musculus C57BL/6J strain: TRAV14D-2*03 , TRAV3D-3*02 , TRAV9D-4*05 , TRAV5D-4*05 , TRAV6D-7*04 , TRAV7D-6*02 , TRAV13D-3*02 , TRAV8D-2*03 , TRAV16D/DV11*04 , TRAV13D-4*03 , TRAV14D-3/DV8*08 , TRAV7N-4*01 , TRAV9N-1*01 , TRAV15D-3*02 , TRAV6N-5*01 , TRAV10N*01 , TRAV6N-6*01 , TRAV11N*01 , TRAV7N-5*01 , TRAV12N-1*01 , TRAV13N-1*01 , TRAV14N-1*01 , TRAV15N-1*01 , TRAV3N-2*01 , TRAV9N-2*01 , TRAV4N-3*01 , TRAV5N-2*01 , TRAV12N-2*01 , TRAV9N-3*01 , TRAV5N-3*01 , TRAV12N-3*01 , TRAV13N-2*01 , TRAV14N-2*01 , TRAV15N-2*01 , TRAV3N-3*01 , TRAV9N-4*01 , TRAV4N-4*01 , TRAV5N-4*01 , TRAV6N-7*01 , TRAV7N-6*01 , TRAV13N-3*01 , TRAV8N-2*01 , TRAV16N*01 , TRAV13N-4*01 , TRAV14N-3*01 , TRAV15N-3*01 , TRAV7-2*02 , TRAV6-3*02 , TRAV7-3*04 , TRAV6-4*03 , TRAV7-4*02 , TRAV8-1*03 , TRAV9-1*02 , TRAV6-5*04

Release 201037-5 (17th of September 2010)

Available species and loci

species	IG loci	TR loci
Bos taurus (Bovine)		TRD
Canis lupus familiaris (Dog)		TRB, TRG
Homo sapiens (human)	IGH, IGK, IGL	TRA, TRB, TRG, TRD
Mus (mouse)	IGH, IGK, IGL	TRA, TRB, TRG, TRD
Oncorhynchus mykiss (Rainbow trout)	IGH	TRB
Oryctolagus cuniculus (Rabbit)	IGH, IGK
Rattus norvegicus (Rat)	IGH, IGK, IGL

Created: 17/09/2010
Last updated: 7/03/2011

Use of this software should be cited as beeing part of "IMGT, the international ImMunoGeneTics information system® http://www.imgt.org (Initiator and coordinator: Marie-Paule Lefranc, Montpellier, France)" with the references: Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text, Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2005); Lefranc, M.-P. et al., Nucleic Acids Research 2009 37(Database issue): D1006-D1012; doi:10.1093/nar/gkn838 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

IMGT initiator and coordinator: Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)
Bioinformatics manager: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr)
Computer manager: Patrice Duroux (Patrice.Duroux@igh.cnrs.fr)
Interface design: Chantal Ginestoux (Chantal.Ginestoux@igh.cnrs.fr)

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