Sequence submission

Display results

A. Detailed view

HTML Text

Nb of nucleotides per line in alignments:

609012015010000

Nb of aligned reference sequences: 1 23456789 101112131415 1617181920

1. Alignment for V-GENE 2. Alignment for D-GENE 3. Alignment for J-GENE 4. Results of IMGT/JunctionAnalysis      with full list of eligible D-GENE      without list of eligible D-GENE 5. Sequence of the JUNCTION ('nt' and 'AA')   6. V-REGION alignment   7. V-REGION translation   8. V-REGION protein display   9. V-REGION mutation and AA change table 10. V-REGION mutation and AA change statistics 11. V-REGION mutation hot spots 12. Sequences of V-, V-J- or V-D-J- REGION ('nt' and 'AA') with gaps in FASTA                and access to IMGT/PhyloGene for V-REGION ('nt') 13. Annotation by IMGT/Automat 14. IMGT Collier de Perles        link to IMGT/Collier-de-Perles tool        IMGT Collier de Perles (for a nb of sequences < 5)        no IMGT Collier de Perles

B. Synthesis view

HTML Text

Nb of nucleotides per line in alignments:

60 9012015010000

Summary table sequence order V-GENE and allele name input

1. Alignment for V-GENE 2. V-REGION alignment 3. V-REGION translation 4. V-REGION protein display   5. V-REGION protein display (with AA class colors)   6. V-REGION protein display (only AA changes displayed)   7. V-REGION most frequently occurring AA   8. Results of IMGT/JunctionAnalysis

C. Excel file

1. Summary 2. IMGT-gapped-nt-sequences 3. nt-sequences 4. IMGT-gapped-AA-sequences 5. AA-sequences 6. Junction   7. V-REGION-mutation-and-AA-change-table   8. V-REGION-nt-mutation-statistics   9. V-REGION-AA-change-statistics 10. V-REGION-mutation-hot-spots 11. Parameters

Advanced parameters

Selection of IMGT reference directory set F+ORFF+ORF+ in-frame PF+ORF including orphonsF+ORF+ in-frame P including orphons With all alleles With allele *01 only Search for insertions and deletions in V-REGION Yes (slower, the nb of submitted sequences in a single run is limited to 10) No Parameters for IMGT/JunctionAnalysis Nb of accepted D-GENE in TRB and TRD JUNCTION (default is 1 for TRB and 3 for TRD) default123 Nb of accepted mutations: default012345678910 in 3'V-REGION default012345678910 in D-REGION default012345678910 in 5'J-REGION Parameters for "Detailed view" Nb of nucleotides to exclude in 5' of the V-REGION for the evaluation of the nb of mutations (in results 9 and 10) Nb of nucleotides to add (or exclude) in 3' of the V-REGION for the evaluation of the alignment score (in results 1)