Alignment of alleles: Ma's night monkey (Aotus nancymaae) TRBV12S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Ma's night monkey (Aotus nancymaae) TRBV subgroup names are according to the human TRBV subgroup names.

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20 
                                                                 R   H   K   V   T   E   M   G   Q   E   V   I 
  AF107742,TRBV12S1*01                                        A AGG CAC AAG GTG ACA GAG ATG GGA CAA GAA GTA ATT

                                                        ___________________CDR1-IMGT____________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                 M   R   C   Q   P   I   L   G   H   N   T                               V   F 
  AF107742,TRBV12S1*01          ATG AGA TGT CAG CCA ATT CTT GGC CAC AAT ACT ... ... ... ... ... ... ... GTT TTC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   R   Q   T   V   M   Q   G   L   E   L   L   T   Y   F   R   N   Q   P 
  AF107742,TRBV12S1*01          TGG TAT AGA CAG ACC GTG ATG CAA GGA CTG GAG TTG CTG ACT TAC TTC CGC AAC CAG CCT

                                IMGT________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                 S                   L   D   D   S   G   M   P   E   D   R   L   S   A   E   M 
  AF107742,TRBV12S1*01          TCT ... ... ... ... CTA GAT GAT TCA GGG ATG CCC GAG GAT CGA TTG TCA GCA GAG ATG

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                 P       T   A   S   L   S   S   L   K   I   Q   P   S   E   P   R   D   S   A 
  AF107742,TRBV12S1*01          CCT ... ACT GCA TCT TTA TCC TCT CTG AAG ATC CAG CCT TCA GAA CCC AGG GAC TCA GCT

                                                _CDR3-IMGT_
                                101 102 103 104 105 106 
                                 V   Y   L   C   A   S   
  AF107742,TRBV12S1*01          GTG TAT CTT TGT GCC AGT GG  #c


#c : rearranged cDNA


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)


Created: 11/07/2011
Author: Géraldine Folch

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