Alignment of alleles: Ma's night monkey (Aotus nancymaae) TRBV7S4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Ma's night monkey (Aotus nancymaae) TRBV subgroup names are according to the human TRBV subgroup names.

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20 
                                                                 R   Y   K   V   T   K   R   G   Q   D   I   A 
  AF107748,TRBV7S4*01                                         C AGG TAC AAA GTC ACA AAG AGG GGA CAG GAT ATA GCT

                                                        ___________________CDR1-IMGT____________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                 F   R   C   D   P   I   S   G   H   V   M                               L   Y 
  AF107748,TRBV7S4*01           TTC AGG TGT GAT CCA ATT TCG GGT CAT GTA ATG ... ... ... ... ... ... ... CTT TAT

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   R   Q   T   L   E   Q   S   P   E   F   L   T   Y   F   Q   Y   E   V 
  AF107748,TRBV7S4*01           TGG TAC CGA CAG ACC CTG GAG CAG AGC CCA GAG TTT CTG ACT TAC TTC CAG TAT GAA GTT

                                IMGT________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                 Q                   Q   D   K   S   G   L   P   S   D   Q   F   S   A   E   R 
  AF107748,TRBV7S4*01           CAA ... ... ... ... CAA GAC AAA TCA GGG CTA CCC AGT GAT CAG TTC TCT GCA GAG AGG

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                 A       E   G   S   F   S   T   L   K   I   Q   H   T   E   Q   R   D   S   A 
  AF107748,TRBV7S4*01           GCT ... GAG GGA TCC TTC TCC ACT CTG AAG ATC CAG CAC ACG GAG CAG CGG GAC TCT GCC

                                                ___CDR3-IMGT____
                                101 102 103 104 105 106 107 108 
                                 M   Y   L   C   A   S   S   T 
  AF107748,TRBV7S4*01           ATG TAT CTC TGT GCC AGC AGC ACA  #c


#c : rearranged cDNA


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)


Created: 11/07/2011
Author: Géraldine Folch

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