Alignment of alleles: Nurse shark (Ginglymostoma cirratum) IGHN14

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Exon names are shown between parentheses on the first line.
The Cysteines involved in the IG CH1, CH2 and CH3 intrachain disulfide bridge are shown with a larger letter C in purple. The Cysteines involved in the H-L or H-H interchain disulfide bridge are shown with a larger letter C in black.
STOP-CODON is indicated by an asterisk.

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                       1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                      G   I   P   P   S   P   P   I   V   S   L   L   H   S   A   T   E   E   Q   R
  U18693  ,IGHN14*01, (CH1) (cDNA) (G)GA ATA CCG CCT TCT CCA CCA ATA GTC AGT CTC CTC CAC TCT GCA ACT GAA GAA CAG AGA

                                      21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                      A   N   R   F   V   Q   L   V   C   L   I   S   G   Y   Y   P   E   N   I   A
  U18693  ,IGHN14*01, (CH1) (cDNA)   GCA AAC AGA TTT GTG CAG CTG GTT TGT CTA ATC AGC GGA TAC TAT CCC GAA AAC ATT GCA

                                      41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                      V   S   W   Q   K   N   T   K   T   I   T   S   G   F   A   T   T   S   P   V
  U18693  ,IGHN14*01, (CH1) (cDNA)   GTG AGC TGG CAG AAG AAC ACA AAG ACC ATA ACT TCT GGT TTT GCA ACA ACA TCC CCA GTG

                                      61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                      K   T   S   S   N   D   F   S   C   A   S   L   L   K   V   P   L   Q   E   W
  U18693  ,IGHN14*01, (CH1) (cDNA)   AAA ACT TCG AGC AAT GAC TTC AGC TGT GCA AGT TTA CTT AAA GTG CCC CTA CAG GAA TGG

                                      81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                      S   R   G   S   V   Y   S   C   Q   V   S   H   S   A   T   S   S   N   Q   R
  U18693  ,IGHN14*01, (CH1) (cDNA)   AGC AGG GGT TCT GTG TAC AGT TGC CAA GTT TCT CAT TCT GCA ACC AGC AGT AAC CAG AGG

                                     101 102 103 104 105 106 107
                                      K   E   I   R   S   T   S
  U18693  ,IGHN14*01, (CH1) (cDNA)   AAA GAA ATT CGA TCA ACA TCC G



                                       1   2   3   4   5   6   7   8   9  10  11  12  13  14  15
                                      E   I   A   V   L   L   R   D   P   T   V   E   E   I   W
  U18693  ,IGHN14*01, (CH2) (cDNA)    AG ATC GCT GTA TTA CTG AGG GAT CCA ACA GTT GAA GAA ATC TGG



This alignment of allele is automatically generated by Mehdi Yousfi alignment of allele tool.


Created: Wednesday, 29-Jun-2011 17:05:44 CEST
Author: Dominique Scaviner

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