Alignment of alleles: Nurse shark (Ginglymostoma cirratum) IGIV1S4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20 
                                 D   I   T   M   T   Q   S   P   P   V   L   S   V   G   L   G   Q   T   A   T 
  U15143  ,IGIV1S4*01           GAC ATC ACC ATG ACC CAG TCT CCC CCG GTG TTG TCA GTC GGA CTG GGC CAG ACC GCA ACC

                                                        ___________________CDR1-IMGT____________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                 I   Y   C   T   A   S   H   N   I   Y   N   D                           L   A 
  U15143  ,IGIV1S4*01           ATC TAC TGT ACG GCC AGT CAT AAC ATT TAC AAT GAC ... ... ... ... ... ... CTT GCT

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   Q   Q   R   E   R   Q   K   P   S   L   L   M   Y   G   A   T         
  U15143  ,IGIV1S4*01           TGG TAC CAG CAG CGA GAA AGA CAG AAA CCC TCT CTC CTG ATG TAT GGC GCA ACA ... ...

                                IMGT________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                                     N   R   Y   T   G   V   S       E   R   F   T   G   R   G 
  U15143  ,IGIV1S4*01           ... ... ... ... ... AAT CGA TAT ACA GGA GTC TCC ... GAG CGA TTC ACG GGC CGT GGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                         S   G   T   S   F   T   L   T   I   S   N   V   Q   N   E   D   V   A 
  U15143  ,IGIV1S4*01           ... ... TCA GGG ACC AGT TTC ACC CTG ACA ATC AGC AAC GTT CAG AAT GAG GAT GTC GCT

                                                _______________CDR3-IMGT________________
                                101 102 103 104 105 106 107 108 109 110 111 112 113 114 
                                 D   Y   Y   C   Q   G   A   Y   G   S   Y   S   N   R 
  U15143  ,IGIV1S4*01           GAC TAT TAC TGT CAG GGC GCA TAT GGC AGC TAC TCC AAT CGG     #c


#c: rearranged cDNA


This alignment of allele is automatically generated by Mehdi Yousfi alignment of allele tool.


Created: Monday, 11-Jul-2011 12:56:55 CEST
Author: Dominique Scaviner

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