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Alignment of alleles: Rainbow trout (Oncorhynchus mykiss) IGIC2S3

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Cysteine involved in the disulfide bridge are shown in purple.
STOP-CODON is indicated by an asterisk.

                                                                                                               
                                                1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                 D   S   T   L   P   P   P   V   L   T   I   L   P   P   S   S 
  U69987  ,IGIC2S3*01,(cDNA)                  (G)AC TCT ACC CTC CCT CCG CCT GTC TTG ACC ATC CTC CCT CCG TCC AGC

                                                ___AB_______                                            ________
                                               15.1    15.3                                                    
                                 12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                 D   E   L   K               S   S   K   V   T   L   V   C   L   A   S   Q   M 
  U69987  ,IGIC2S3*01,(cDNA)    GAT GAG TTG AAG ... ... ... TCC AGC AAA GTC ACC CTG GTG TGT CTG GCC AGT CAG ATG

                                _________BC_____________________                            ___________CD_______
                                                                                           45.1    45.3    45.5
                                 29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                 A   M           G   Y   A   D   V   S   W   T   A   G   G   T   P   V   T   G 
  U69987  ,IGIC2S3*01,(cDNA)    GCC ATG ... ... GGT TAC GCA GAT GTC AGC TGG ACA GCT GGA GGG ACT CCG GTC ACC GGC

                                ________                                _________________________DE_____________
                                   45.7                                84.1    84.3    84.5    84.7    85.6    
                               45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                         G   I   A   T   S   G   P   V   P   Q   A   D                         
  U69987  ,IGIC2S3*01,(cDNA)    ... ... GGC ATC GCT ACG AGT GGG CCG GTG CCG CAA GCC GAC ... ... ... ... ... ...

                                ________________                                                _EF_____        
                               85.4    85.2                                                    96.1            
                                   85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                 K   T   F   Q   L   S   S   C   L   T   V   D   T   S   E   W           N   Q 
  U69987  ,IGIC2S3*01,(cDNA)    AAG ACG TTT CAA CTC AGC AGC TGT CTG ACC GTT GAC ACG TCA GAA TGG ... ... AAC CAG

                                                        _______________________FG___________________________    
                                                                                                               
                                 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                 D   K   V   F   S   C   K   V   T   V   G                   S   K   F   A   E 
  U69987  ,IGIC2S3*01,(cDNA)    GAC AAA GTG TTC TCG TGT AAA GTC ACC GTG GGA ... ... ... ... TCC AAG TTC GCT GAG

                                                                        
                                119 120 121 122 123 124 125 126 127 128 129
                                 K   D   I   K   K   S   E   C   S   T   E   * 
  U69987  ,IGIC2S3*01,(cDNA)    AAA GAC ATC AAG AAG TCT GAA TGC AGC ACT GAA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: Wednesday, 29-Jun-2011 17:05:38 CEST
Author: Nathalie Bosc
Contact: Marie-Paule Lefranc

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