Alignment of alleles: Sandbar shark (Carcharhinus plumbeus) IGIJ (overview)

Only one sequence for each allele is shown. Other known sequences are shown in the individual Alignments of alleles.

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The F, G and G of the FGXG motif are shown in brown, in the allele *01 amino acid sequence.

                                          
                                             R   F   G   K   G   T   K   L   N   L   G 
  U01657  ,IGIJ1S1*01                       ACC TTC GGG AAA GGA ACC AAG CTG AAC CTG GGC A     ~VJ
                                         I   I   F   G   S   G   T   K   L   N   L   G
  U34992  ,IGIJ1S2*01                   ATC ATT TTC GGG AGT GGA ACG AAG TTG AAT CTG GGC A     ~VJ
                                         F   I   F   G   R   G   T   K   L   N   L   N 
  U35006  ,IGIJ1S3*01                   TTC ATT TTC GGG AGA GGA ACT AAG TTG AAT CTG AAC A     ~VJ
                                         F   T   F   G   R   G   T   K   L   N   L   G 
  U35007  ,IGIJ1S4*01                   TTC ACC TTC GGG AGA GGA ACC AAG CTG AAC CTG GGC A     ~VJ
                                         F   T   F   G   R   G   T   K   L   N   L   G  
  U35008  ,IGIJ1S5*01                   TTC ACC TTC GGG AGA GGA ACC AAG CTG AAC TTG GGA       ~VJ
                                         S   I   F   G   S   G   T   K   L   N   L   G   
  M81314  ,IGIJ1S6*01                   AGC ATT TTC GGG AGT GGA ACG AAG TTG AAT CTG GGC       #c
                                         S   T   F   G   R   G   T   K   L   N   L   G   
  M29043  ,IGIJ1S7*01                   TCC ACC TTC GGG AGA GGA ACC AAG CTG AAC CTG GGC       #c
                                                         G   G   T   K   L   G   V   G    
  M29044  ,IGIJ1S8*01                                   GGC GGA ACC AAG CTG GGC GTT GGC       #c
 
~VJ: VJ genomic DNA rearranged in the cassette.
#c: rearranged cDNA


Created: 08/09/2003
Author: Dominique Scaviner

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