Alignment of alleles: Sandbar shark (Carcharhinus plumbeus) IGIV1S5

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20 
                                 D   I   V   L   T   Q   P   G   S       I   S   T   S   P   G   K   T   V   K 
  U35008  ,IGIV1S5*01           GAT ATT GTC CTG ACC CAG CCA GGA TCC ... ATT TCA ACA TCC CCA GGA AAG ACT GTC AAG

                                                        ___________________CDR1-IMGT____________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                 I   T   C   T   A   S   G   G   S   I   D   D   Y   Y                   T   S 
  U35008  ,IGIV1S5*01           ATC ACC TGT ACC GCG TCC GGA GGC AGC ATT GAC GAC TAC TAC ... ... ... ... ACG AGC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   W   Q   K   P   D   R   A   P   V   L   V   W   S   E   Y   G         
  U35008  ,IGIV1S5*01           TGG TAC TGG CAG AAA CCC GAC AGA GCC CCT GTG CTT GTT TGG TCC GAG TAC GGT ... ...

                                IMGT________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                                     G   M   A   S   G   I   P       D   R   F   A   G   S   V 
  U35008  ,IGIV1S5*01           ... ... ... ... ... GGT ATG GCT TCG GGT ATT CCA ... GAT CGT TTC GCC GGG TCT GTG

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                 D   S   S   S   N   K   M   H   L   T   I   T   N   V   Q   S   E   D   A   A 
  U35008  ,IGIV1S5*01           GAC TCA TCG AGC AAC AAG ATG CAT TTA ACC ATC ACC AAC GTT CAA TCG GAG GAC GCC GCC

                                                _____________CDR3-IMGT__________
                                101 102 103 104 105 106 107 108 109 110 111 
                                 D   Y   Y   C   A   V   A   D   S   G   I   
  U35008  ,IGIV1S5*01           GAT TAT TAC TGT GCT GTA GCT GAT AGC GGA ATA       ~VJ

~VJ: VJ genomic DNA rearranged in the cassette.


This alignment of allele is automatically generated by Mehdi Yousfi alignment of allele tool.


Created: Monday, 11-Jul-2011 12:56:59 CEST
Author: Dominique Scaviner

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