Alignment of alleles: Common carp (Cyprinus carpio) IGIC1S4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Cysteine involved in the disulfide bridge are shown in purple.
STOP-CODON is indicated by an asterisk.

                                                                                                                  
                                                           1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                            S   V   T   R   P   K   V   S   V   L   P   P   S   S 
  AB015904,IGIC1S4*01,(cDNA)                             (A)GC GTC ACT CGT CCT AAA GTG AGC GTC CTG CCG CCC TCC AGT
                                                                                                                  
  AB015898,IGIC1S4*01,(cDNA)                             (-)-- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                   ___AB_______                                            ________
                                                  15.1    15.3                                                    
                                    12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                    A   E   I   S   S           K   K   T   A   T   L   V   C   V   A   S   K   G 
  AB015904,IGIC1S4*01,(cDNA)       GCA GAG ATC TCC TCA ... ... AAG AAG ACA GCG ACA CTG GTG TGT GTG GCC AGC AAG GGC
                                                                                                                  
  AB015898,IGIC1S4*01,(cDNA)       --- --- --- --- --- ... ... --- --- --- --- --- --- --- --- --- --- --- --- ---

                                   _________BC_____________________                            ___________CD_______
                                                                                              45.1    45.3    45.5
                                    29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                    F   P           S   D   W   S   L   S   W   K   V   D   G   S   S   R         
  AB015904,IGIC1S4*01,(cDNA)       TTC CCG ... ... TCA GAC TGG AGC CTG AGC TGG AAG GTG GAT GGG AGC AGC AGG ... ...
                                                                                                                  
  AB015898,IGIC1S4*01,(cDNA)       --- --- ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ...

                                   ________                                _________________________DE_____________
                                      45.7                                84.1    84.3    84.5    84.7    85.6    
                                  45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                            S   Q   E   S   S   A   G   L   L   E   K   D                         
  AB015904,IGIC1S4*01,(cDNA)       ... ... TCT CAG GAG AGC AGC GCT GGG CTC CTG GAG AAG GAC ... ... ... ... ... ...
                                                                                                                  
  AB015898,IGIC1S4*01,(cDNA)       ... ... --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ...

                                   ________________                                                _EF_____        
                                  85.4    85.2                                                    96.1            
                                      85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                    G   L   Y   S   W   S   S   S   L   T   L   S   E   Q   E   W           M   E 
  AB015904,IGIC1S4*01,(cDNA)       GGT CTG TAC AGC TGG AGC AGC AGC CTG ACT CTC TCT GAG CAG GAG TGG ... ... ATG GAG
                                       
  AB015898,IGIC1S4*01,(cDNA)       --- 

                                                           _______________________FG___________________________    
                                                                                                                  
                                    99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                    S   V   S   V   S   C   E   A   T   R   S               G   Q   P   A   L   T 
  AB015904,IGIC1S4*01,(cDNA)       AGC GTC TCA GTG AGC TGT GAG GCC ACA CGG AGC ... ... ... GGC CAG CCT GCG CTC ACT

                                                                          
                                   119 120 121 122 123 124 125 126 127 128
                                    G   H   V   T   R   Q   Q   C   S   E   *  
  AB015904,IGIC1S4*01,(cDNA)       GGA CAC GTG ACG AGA CAG CAG TGT TCA GAG 



This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 16/04/2003
Author: Nathalie Bosc
Contact: Marie-Paule Lefranc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text; Lefranc, M.-P. et al., Nucleic Acids Research 2009 37: D1006-D1012; doi:10.1093/nar/gkn838 Full text.


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