IMGT Web resources: IMGT repertoire

Alignment of alleles: Common carp (Cyprinus carpio) IGIC2S3

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Cysteine involved in the disulfide bridge are shown in purple.
STOP-CODON is indicated by an asterisk.

                                                                                                                  
                                                   1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                    D   A   A   A   A   A   P   E   L   S   I   L   R   P   S   R 
  AB091119,IGIC2S3*01,(cDNA)                     (G)AT GCT GCT GCT GCT GCT CCT GAG CTG AGC ATC CTC CGT CCG TCC AGA

                                                   ___AB_______                                            ________
                                                  15.1    15.3                                                    
                                    12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                    E   E   L   S               S   S   K   L   T   L   V   C   L   I   N   H   M 
  AB091119,IGIC2S3*01,(cDNA)       GAA GAG CTG AGC ... ... ... TCC AGT AAA CTC ACT CTG GTG TGT CTG ATC AAT CAC ATG

                                   _________BC_____________________                            ___________CD_______
                                                                                              45.1    45.3    45.5
                                    29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                    S   G           A   F   A   D   V   R   W   L   V   N   G   N   S   V   T   E 
  AB091119,IGIC2S3*01,(cDNA)       TCT GGG ... ... GCT TTT GCT GAT GTG CGT TGG CTT GTG AAC GGG AAC TCA GTT ACT GAA

                                   ________                                _________________________DE_____________
                                      45.7                                84.1    84.3    84.5    84.7    85.6    
                                  45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                            G   V   F   T   G   S   A   E   Q   Q   P   D                         
  AB091119,IGIC2S3*01,(cDNA)       ... ... GGC GTC TTC ACT GGA TCT GCT GAA CAG CAG CCT GAT ... ... ... ... ... ...

                                   ________________                                                _EF_____        
                                  85.4    85.2                                                    96.1            
                                      85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                    K   K   F   K   M   S   S   I   L   T   I   D   S   S   E   W           D   K 
  AB091119,IGIC2S3*01,(cDNA)       AAG AAA TTC AAG ATG AGC AGT ATT TTA ACT ATT GAT AGC TCA GAG TGG ... ... GAC AAA

                                                           _______________________FG___________________________    
                                                                                                                  
                                    99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                    D   A   Q   L   T   C   E   A   T   A   A                   S   K   T   N   R 
  AB091119,IGIC2S3*01,(cDNA)       GAC GCA CAG CTG ACA TGT GAA GCG ACT GCT GCC ... ... ... ... TCA AAA ACC AAC AGA

                                                                          
                                   119 120 121 122 123 124 125 126 127 128
                                    K   S   I   K   K   S   E   C   S   D   *
  AB091119,IGIC2S3*01,(cDNA)       AAA AGC ATC AAG AAA TCT GAA TGC AGC GAC

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 08/10/2003
Author: Nathalie Bosc
Contact: Marie-Paule Lefranc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text; Lefranc, M.-P. et al., Nucleic Acids Research 2009 37: D1006-D1012; doi:10.1093/nar/gkn838 Full text.

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