Alignment of alleles: Chinese perch (Siniperca chuatsi) IGIC1S5

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Cysteine involved in the disulfide bridge are shown in purple.
STOP-CODON is indicated by an asterisk.

                                                                                                                  
                                                           1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                            S   D   V   R   P   T   L   T   V   L   P   P   S   S 
  AY013294,IGIC1S5*01,(cDNA)                             (A)GT GAT GTC CGT CCC ACC CTG ACG GTG CTG CCC CCC TCC AGC

                                                   ___AB_______                                            ________
                                                  15.1    15.3                                                    
                                    12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                    E   E   L   Q               Q   G   K   A   T   L   M   C   L   A   N   K   G 
  AY013294,IGIC1S5*01,(cDNA)       GAG GAG CTT CAG ... ... ... CAG GGG AAG GCC ACG CTC ATG TGC CTG GCC AAC AAG GGC

                                   _________BC_____________________                            ___________CD_______
                                                                                              45.1    45.3    45.5
                                    29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                    F   P           S   D   W   S   L   A   W   K   V   D   G   S   S   S   S   S 
  AY013294,IGIC1S5*01,(cDNA)       TTC CCC ... ... TCA GAC TGG AGT CTG GCC TGG AAG GTG GAC GGC AGC AGC AGC AGC AGC

                                   _______________                                _________________________DE_____________
                                      45.7    45.9                                84.1    84.3    84.5    84.7    85.6    
                                  45.6    45.8      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                    S   S   S   W   E   E   S   R   S   P   G   V   L   E   K   D                 
  AY013294,IGIC1S5*01,(cDNA)       AGC AGC AGC TGG GAG GAG AGC AGG AGC CCC GGG GTG CTG GAG AAG GAC ... ... ... ... ... ...

                                  ________________                                                _EF_____        
                                  85.4    85.2                                                    96.1            
                                      85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                    G   R   Y   S   W   S   S   T   L   R   L   P   A   D   Q   W           R   K    
  AY013294,IGIC1S5*01,(cDNA)       GGC CGC TAC AGC TGG AGC AGC ACC CTG AGG CTC CCT GCA GAC CAG TGG ... ... AGG AAG 

                                                           _______________________FG___________________________    
                                                                                                                  
                                    99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                    V   G   S   V   T   C   E   A   T   Q   G               S   Q   T   P   L   S   
  AY013294,IGIC1S5*01,(cDNA)       GTG GGC TCT GTG ACC TGT GAG GCC ACC CAG GGC ... ... ... TCC CAG ACT CCG CTC TCA 

                                                                          
                                                                                      
                                   119 120 121 122 123 124 125 126 127 128 129 
                                    E   T   L   R   R   D   Q   C   P   Q   S   *
  AY013294,IGIC1S5*01,(cDNA)       GAG ACG CTG AGG AGA GAC CAG TGT CCC CAG TCC 



This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 01/10/2003
Author: Nathalie Bosc

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