Alignment of alleles: Chinese perch (Siniperca chuatsi) IGIV1S4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   I   V   L   T   Q   S   P   G   S   Q   S   V   V   P   G   Q   T   V   S 
  AY013291,IGIV1S4*01           CAA ATC GTC CTG ACT CAG TCT CCT GGA TCT CAG TCT GTT GTT CCA GGA CAG ACT GTC TCT

                                                        _________________CDR1-IMGT______________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   R   C   K   T   S   T   S   V   G   N   W                           L   N 
  AY013291,IGIV1S4*01           CTC AGA TGT AAA ACC AGT ACA AGT GTT GGT AAC TGG ... ... ... ... ... ... CTG AAC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   L   Q   K   P   G   E   T   P   K   L   L   I   Y   L   A   T         
  AY013291,IGIV1S4*01           TGG TAC CTT CAG AAA CCT GGA GAA ACT CCT AAA CTC CTG ATT TAT TTA GCT ACA ... ...

                                GT__________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     N   R   H   S   G   V   P       G   R   F   S   G   S   G 
  AY013291,IGIV1S4*01           ... ... ... ... ... AAC CGT CAC TCT GGA GTT CCA ... GGT CGT TTT AGT GGA AGT GGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                         S   G   T   D   F   T   L   T   I   S   G   V   Q   A   E   D   S   G 
  AY013291,IGIV1S4*01           ... ... TCT GGG ACT GAC TTC ACT CTG ACC ATC AGT GGA GTC CAG GCT GAA GAT TCA GGA

                                                CDR3-IMGT
                                101 102 103 104 105
                                 V   Y   Y   C   Q  
  AY013291,IGIV1S4*01           GTT TAC TAC TGT CAG  #c


#c: rearranged cDNA


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 01/10/2003
Author: Nathalie Bosc

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For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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