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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                
                                                
                                                 1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                 Q   V   Q   L   Q   Q   S   G   A       E   L   V   K   P   G   T   S   V   K 
  RatNor_3_chr6 IGHV1-47*01 F V-REGION gDNA     caa gtc cag ctg cag cag tct gga gct ... gag ctg gtg aag cct ggg act tct gtg aag
                                                                                                                               
  AABR03051703  IGHV1-47*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                        _____________________CDR1-IMGT______________________    
                                                
                                                 21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                 L   S   C   K   A   S   G   Y   T   F                       T   S   N   H   M 
  RatNor_3_chr6 IGHV1-47*01 F V-REGION gDNA     ctg tcc tgc aag gct tct ggc tac acc ttt ... ... ... ... ... act agc aac cat atg
                                                                                                                               
  AABR03051703  IGHV1-47*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- ---


                                                                                                                _______________C
                                                
                                                 40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                 N   W   I   K   Q   T   T   G   Q   G   L   E   W   I   G   I   I   N   P   G 
  RatNor_3_chr6 IGHV1-47*01 F V-REGION gDNA     aac tgg ata aag cag acg act gga cag ggc ctt gag tgg att gga att att aat ccg gga
                                                                                                                               
  AABR03051703  IGHV1-47*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                DR2-IMGT________________                                                        
                                                
                                                 60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                         S   G   G   T   S   Y   N   V   K   F   K       G   K   A   T   L   T 
  RatNor_3_chr6 IGHV1-47*01 F V-REGION gDNA     ... ... agt gga ggt act agc tac aat gtg aag ttc aag ... ggc aag gcc aca ttg act
                                                                                                                               
  AABR03051703  IGHV1-47*01 F V-REGION gDNA     ... ... --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                                
                                                
                                                 80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                 V   D   K   S   S   S   T   A   F   M   Q   L   S   S   L   T   P   E   D   S 
  RatNor_3_chr6 IGHV1-47*01 F V-REGION gDNA     gta gac aaa tcc tcc agc aca gcc ttc atg caa ctc agc agc ctg aca cct gag gac tct
                                                                                                                               
  AABR03051703  IGHV1-47*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                        CDR3-IMG
                                                
                                                100 101 102 102A103 104 105 106 
                                                 A   V   Y       Y   C   A   R  
  RatNor_3_chr6 IGHV1-47*01 F V-REGION gDNA     gcg gtc tat ... tac tgt gca aga 
                                                                                
  AABR03051703  IGHV1-47*01 F V-REGION gDNA     --- --- --- ... --- --- --- --- 

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
04/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet