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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                
                                                 
                                                  1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                  E   V   Q   L   Q   Q   S   G   A       E   L   V   R   P   G   T   S   V   K 
  RatNor_2_chr6 IGHV1-6*01 ORF V-REGION gDNA     gaa gtc cag ctg cag cag tct ggg gct ... gag ctt gtg aga cct ggg acc tct gtg aag
                                                                                                                                
  AABR03048977  IGHV1-6*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                         _____________________CDR1-IMGT______________________    
                                                 
                                                  21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                  L   S   C   K   V   S   G   D   T   I                       I   A   Y   Y   M 
  RatNor_2_chr6 IGHV1-6*01 ORF V-REGION gDNA     tta tct tgc aaa gtt tct ggc gat acc att ... ... ... ... ... ata gca tac tac atg
                                                                                                                                
  AABR03048977  IGHV1-6*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- ---


                                                                                                                 _______________C
                                                 
                                                  40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                  H   F   V   K   Q   R   P   G   Q   G   L   E   W   I   G   R   I   D   P   E 
  RatNor_2_chr6 IGHV1-6*01 ORF V-REGION gDNA     cac ttt gtg aag caa agg cct gga cag ggt ctg gaa tgg ata gga agg att gat cct gag
                                                                                                                                
  AABR03048977  IGHV1-6*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                 DR2-IMGT________________                                                        
                                                 
                                                  60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                          D   D   S   T   K   Y   A   K   K   F   K       N   K   A   T   L   T 
  RatNor_2_chr6 IGHV1-6*01 ORF V-REGION gDNA     ... ... gat gat agt act aaa tat gct aag aag ttc aaa ... aac aag gcg aca ctc act
                                                                                                                                
  AABR03048977  IGHV1-6*01 ORF V-REGION gDNA     ... ... --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                                 
                                                 
                                                  80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                  A   D   T   S   S   N   T   A   Y   L   K   L   S   S   L   T   S   E   D   T 
  RatNor_2_chr6 IGHV1-6*01 ORF V-REGION gDNA     gca gat aca tcc tcc aac aca gcc tac ctg aag ctc agc agc ctg acc tct gag gac act
                                                                                                                                
  AABR03048977  IGHV1-6*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                         CDR3-IMG
                                                 
                                                 100 101 102 102A103 104 105 106 
                                                  A   T   Y       F   C   T   T  
  RatNor_2_chr6 IGHV1-6*01 ORF V-REGION gDNA     gca acc tat ... ttt tgt acc aca 
                                                                                 
  AABR03048977  IGHV1-6*01 ORF V-REGION gDNA     --- --- --- ... --- --- --- --- 

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
03/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet