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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                
                                               
                                                1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                E   V   Q   L   Q   Q   S   G   P       E   I   V   R   P   G   T   S   V   K 
  RatNor_2_chr6 IGHV1-9*01 P V-REGION gDNA     gaa gtc cag ttg caa cag tct ggg cct ... gag att gtg agg cct ggg acc tca gtc aaa
                                                                                                                              
  AABR03049529  IGHV1-9*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                       _____________________CDR1-IMGT______________________    
                                               
                                                21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                L   S   *   K   A   S   G   Y   S   I                       T   E   Y   Y   I 
  RatNor_2_chr6 IGHV1-9*01 P V-REGION gDNA     ttg tcc tga aag gct tct ggc tac agc att ... ... ... ... ... aca gaa tac tat ata
                                                                                                                              
  AABR03049529  IGHV1-9*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- ---


                                                                                                               _______________C
                                               
                                                40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                E   W   V   K   Q   R   P   E   Q   G   L   E   W   I   G   M   I   D   P   E 
  RatNor_2_chr6 IGHV1-9*01 P V-REGION gDNA     gag tgg gtg aag cag agg cct gaa caa ggc ctg gaa tgg att gga atg att gat cct gag
                                                                                                                              
  AABR03049529  IGHV1-9*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                               DR2-IMGT________________                                                        
                                               
                                                60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                        D   G   E   T   K   Y   A   Q   K   F   Q       S   K   A   T   L   T 
  RatNor_2_chr6 IGHV1-9*01 P V-REGION gDNA     ... ... gat ggt gaa act aaa tat gct cag aag ttc caa ... agc aag gcc aca ctg act
                                                                                                                              
  AABR03049529  IGHV1-9*01 P V-REGION gDNA     ... ... --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                               
                                               
                                                80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                A   D   T   S   S   N   T   A   Y   M   E   L   S   R   L   I   S   E   D   T 
  RatNor_2_chr6 IGHV1-9*01 P V-REGION gDNA     gca gat aca tcc tcc aac aca gcc tac atg gag ctc agc aga ctg ata tct gag gac act
                                                                                                                              
  AABR03049529  IGHV1-9*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                       CDR3-IMG
                                               
                                               100 101 102 102A103 104 105 106 
                                                A   I   Y       F   C   A   R  
  RatNor_2_chr6 IGHV1-9*01 P V-REGION gDNA     gca atc tat ... ttt tgt gct aga 
                                                                               
  AABR03049529  IGHV1-9*01 P V-REGION gDNA     --- --- --- ... --- --- --- --- 

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
03/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet