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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                
                                                  
                                                   1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                   Q   V   Q   L   K   E   T   G   P       G   L   V   Q   P   T   Q   T   L   S 
  RatNor_1_chr6 IGHV2-65*01 ORF V-REGION gDNA     cag gtg cag ctg aag gag aca gga cct ... ggc ctg gtg caa cca aca cag acc ctg tcc
                                                                                                                                 
  AABR03048805  IGHV2-65*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                          _____________________CDR1-IMGT______________________    
                                                  
                                                   21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                   I   T   C   T   V   S   G   F   S   L                       T   S   Y   Y   M 
  RatNor_1_chr6 IGHV2-65*01 ORF V-REGION gDNA     atc aca tgt act gtt tct ggg ttc tca tta ... ... ... ... ... acc agc tat tat atg
                                                                                                                                 
  AABR03048805  IGHV2-65*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- ---


                                                                                                                  _______________C
                                                  
                                                   40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                   Q   W   V   R   Q   T   P   G   K   G   L   E   W   M   G   F   I   R   S   G 
  RatNor_1_chr6 IGHV2-65*01 ORF V-REGION gDNA     cag tgg gtt cgc cag act cca gga aag gga cta gaa tgg atg gga ttt ata cgg agt ggt
                                                                                                                                 
  AABR03048805  IGHV2-65*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                  DR2-IMGT________________                                                        
                                                  
                                                   60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                               G   S   T   E   Y   N   S   E   F   K       S   R   L   S   I   S 
  RatNor_1_chr6 IGHV2-65*01 ORF V-REGION gDNA     ... ... ... gga agc aca gag tat aat tca gag ttc aaa ... tcc cga ctt agc atc agc
                                                                                                                                 
  AABR03048805  IGHV2-65*01 ORF V-REGION gDNA     ... ... ... --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                                  
                                                  
                                                   80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                   R   D   T   S   K   N   Q   V   F   L   K   M   N   S   L   K   T   E   D   T 
  RatNor_1_chr6 IGHV2-65*01 ORF V-REGION gDNA     agg gac acc tcc aag aac caa gtt ttc tta aaa atg aac agt ctg aaa aca gag gac aca
                                                                                                                                 
  AABR03048805  IGHV2-65*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                          _CDR3-IMGT__
                                                  
                                                  100 101 102 102A103 104 105 106 
                                                   G   V   Y       Y   C   A   R  
  RatNor_1_chr6 IGHV2-65*01 ORF V-REGION gDNA     ggc gtg tac ... tac tgt gcc aga ga
                                                                                  
  AABR03048805  IGHV2-65*01 ORF V-REGION gDNA     --- --- --- ... --- --- --- --- --

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
05/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet