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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                
                                                 
                                                  1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                  E   V   Q   L   V   E   S   G   G       G   L   V   Q   P   R   R   S   L   K 
  RatNor_6_chr6 IGHV5-2*01 ORF V-REGION gDNA     gag gta cag ctg gtt gag tct ggg gga ... ggc tta gtg cag ccc aga agg tcc ctg aaa
                                                                                                                                
  AABR03051316  IGHV5-2*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                         _____________________CDR1-IMGT______________________    
                                                 
                                                  21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                  L   S   C   A   A   S   G   F   T   F                       I   N   Y   G   I 
  RatNor_6_chr6 IGHV5-2*01 ORF V-REGION gDNA     ctc tcc tgt gca gcc tct gga ttc act ttc ... ... ... ... ... att aac tat ggg ata
                                                                                                                                
  AABR03051316  IGHV5-2*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- ---


                                                                                                                 _______________C
                                                 
                                                  40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                  N   W   V   H   Q   T   P   E   K   I   L   E   W   V   A   Y   I   S   R   A 
  RatNor_6_chr6 IGHV5-2*01 ORF V-REGION gDNA     aac tgg gtc cac cag act cca gaa aag att ctg gag tgg gtg gca tat att agt cgt gct
                                                                                                                                
  AABR03051316  IGHV5-2*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                 DR2-IMGT________________                                                        
                                                 
                                                  60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                          S   N   D   I   Y   Y   A   D   T   M   K       G   Q   F   T   I   S 
  RatNor_6_chr6 IGHV5-2*01 ORF V-REGION gDNA     ... ... agt aat gac atc tac tat gca gac acc atg aag ... ggc caa ttc acc atc tcc
                                                                                                                                
  AABR03051316  IGHV5-2*01 ORF V-REGION gDNA     ... ... --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                                 
                                                 
                                                  80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                  R   D   N   A   K   N   T   L   Y   L   Q   L   S   S   L   R   S   E   D   T 
  RatNor_6_chr6 IGHV5-2*01 ORF V-REGION gDNA     aga gac aat gcc aag aac acc ctg tac ctg caa cta agc agt ctg agg tct gag gac aca
                                                                                                                                
  AABR03051316  IGHV5-2*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                         _CDR3-IMGT__
                                                 
                                                 100 101 102 102A103 104 105 106 
                                                  A   F   L   Y   F   C   A   G  
  RatNor_6_chr6 IGHV5-2*01 ORF V-REGION gDNA     gcc ttc ttg tat ttc tgt gca gga ga
                                                                                 
  AABR03051316  IGHV5-2*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
09/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet