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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                
                                                  
                                                   1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                   E   V   K   L   V   E   S   G   G       G   L   V   Q   P   G   S   S   L   K 
  RatNor_1_chr6 IGHV5-24*01 ORF V-REGION gDNA     gag gtg aag cta gtg gag tct ggg gga ... gga tta gta cag cct gga agt tcc ctg aaa
                                                                                                                                 
  AABR03048499  IGHV5-24*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                          _____________________CDR1-IMGT______________________    
                                                  
                                                   21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                   L   S   C   V   A   S   S   S   L   L   C   R   F   T   F   S   K   Y   D   M 
  RatNor_1_chr6 IGHV5-24*01 ORF V-REGION gDNA     ctc tcc tgt gta gcc tct tcc agc ctc ctg tgt aga ttc act ttc agt aag tat gac atg
                                                                                                                                 
  AABR03048499  IGHV5-24*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                                                                  _______________C
                                                  
                                                   40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                   R   W   V   H   Q   A   P   K   K   G   L   E   L   V   A   I   I   Y   Y   G 
  RatNor_1_chr6 IGHV5-24*01 ORF V-REGION gDNA     cgc tgg gtt cac cag gct cca aag aag ggt ctg gaa ttg gta gca atc att tat tat ggt
                                                                                                                                 
  AABR03048499  IGHV5-24*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                  DR2-IMGT________________                                                        
                                                  
                                                   60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                           S   D   N   K   Y   Y   A   D   I   V   K       G   Q   F   T   I   S 
  RatNor_1_chr6 IGHV5-24*01 ORF V-REGION gDNA     ... ... agt gat aac aag tac tat gca gac ata gtg aag ... ggt caa ttc acc atc tcc
                                                                                                                                 
  AABR03048499  IGHV5-24*01 ORF V-REGION gDNA     ... ... --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                                  
                                                  
                                                   80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                   R   E   N   S   K   N   T   L   Y   L   E   K   S   S   L   R   S   E   D   T 
  RatNor_1_chr6 IGHV5-24*01 ORF V-REGION gDNA     aga gag aat tct aag aac acc ctg tac ctg gaa aag agc agt ctg agg tct gag gac aca
                                                                                                                                 
  AABR03048499  IGHV5-24*01 ORF V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                          CDR3-IMG
                                                  
                                                  100 101 102 102A103 104 105 106 
                                                   A   M   Y       Y   F   A   K  
  RatNor_1_chr6 IGHV5-24*01 ORF V-REGION gDNA     gcc atg tat ... tat ttt gca aaa 
                                                                                  
  AABR03048499  IGHV5-24*01 ORF V-REGION gDNA     --- --- --- ... --- --- --- --- 

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
09/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet