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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                
                                                
                                                 1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                 E   V   Q   L   V   E   S   G   G       G   L   V   Q   P   G   R   S   L   K 
  RatNor_1_chr6 IGHV5-27*01 F V-REGION gDNA     gag gtg cag ctg gtg gaa tct ggg gga ... ggc tta gtg cag cct gga agg tcc ctg aaa
                                                                                                                               
  AABR03053479  IGHV5-27*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                        _____________________CDR1-IMGT______________________    
                                                
                                                 21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                 L   S   C   A   A   S   G   F   T   F                       S   N   Y   Y   M 
  RatNor_1_chr6 IGHV5-27*01 F V-REGION gDNA     ctc tcc tgt gca gcc tca gga ttc act ttc ... ... ... ... ... agt aac tat tac atg
                                                                                                                               
  AABR03053479  IGHV5-27*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- ---


                                                                                                                _______________C
                                                
                                                 40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                 A   W   V   R   Q   A   P   T   K   G   L   E   W   V   A   Y   I   S   T   G 
  RatNor_1_chr6 IGHV5-27*01 F V-REGION gDNA     gcc tgg gtc cgc cag gct cca acg aag ggt ctg gag tgg gtc gca tac att agt act ggt
                                                                                                                               
  AABR03053479  IGHV5-27*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                DR2-IMGT________________                                                        
                                                
                                                 60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                         G   G   S   T   Y   Y   R   D   S   V   K       G   R   F   T   I   S 
  RatNor_1_chr6 IGHV5-27*01 F V-REGION gDNA     ... ... ggt ggt agc act tac tat cga gac tcc gtg aag ... ggc cga ttc act atc tcc
                                                                                                                               
  AABR03053479  IGHV5-27*01 F V-REGION gDNA     ... ... --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                                
                                                
                                                 80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                 R   D   N   A   K   S   T   L   Y   L   Q   M   D   S   L   R   S   E   D   T 
  RatNor_1_chr6 IGHV5-27*01 F V-REGION gDNA     aga gat aat gca aaa agc acc cta tac ctg caa atg gac agt ctg agg tct gag gac acg
                                                                                                                               
  AABR03053479  IGHV5-27*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                        _CDR3-IMGT__
                                                
                                                100 101 102 102A103 104 105 106 
                                                 A   T   Y       Y   C   T   T  
  RatNor_1_chr6 IGHV5-27*01 F V-REGION gDNA     gcc act tat ... tac tgt aca aca ga
                                                                                
  AABR03053479  IGHV5-27*01 F V-REGION gDNA     --- --- --- ... --- --- --- --- --

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
09/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet