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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                 
                                                
                                                 1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                 E   V   Q   L   V   E   S   G   K       G   L   V   Q   P   G   R   S   L   K 
  RatNor_1_chr6 IGHV5-63*01 P V-REGION gDNA     gag gtg caa ttg gtg gag tct ggg aaa ... ggc tta gtt cag cct gga agg tcc cta aaa
                                                                                                                               
  AABR03049003  IGHV5-63*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                        _____________________CDR1-IMGT______________________    
                                                
                                                 21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                 L   S   C   A   A   S   G   F   T   F                       S   D   C   W   M 
  RatNor_1_chr6 IGHV5-63*01 P V-REGION gDNA     ctg tct tgt gca gct tct gga ttt act ttc ... ... ... ... ... agt gac tgt tgg atg
                                                                                                                               
  AABR03049003  IGHV5-63*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- ---


                                                                                                                _______________C
                                                
                                                 40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                 S   W   V   W   Q   A   T   E   K   G   L   Y   W   V   A   S   I   N   Y     
  RatNor_1_chr6 IGHV5-63*01 P V-REGION gDNA     tcc tgg gtc tgg cag gct aca gag aag ggg ctt tac tgg gta gca tcc att aat tat ...
                                                                                                                               
  AABR03049003  IGHV5-63*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ...


                                                DR2-IMGT________________                                                        
                                                
                                                 60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                     G   D   S   T   S   Y       A   D   T   V   K       G   *   F   T   I   F 
  RatNor_1_chr6 IGHV5-63*01 P V-REGION gDNA     ... ggt gat agt aca tcc tat ... gca gac act gtg aag ... ggc tga ttc act atc ttc
                                                                                                                               
  AABR03049003  IGHV5-63*01 P V-REGION gDNA     ... --- --- --- --- --- --- ... --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                                
                                                
                                                 80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                 R   D   N   P   K   N   T   L   Y   L   Q   I   S   S   L   R   S   E   D   T 
  RatNor_1_chr6 IGHV5-63*01 P V-REGION gDNA     aga gac aat ccc aag aac act ctc tat ctg caa att agt agt ctg agg tct gag gac aca
                                                                                                                               
  AABR03049003  IGHV5-63*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                        _CDR3-IMGT__
                                                
                                                100 101 102 102A103 104 105 106 
                                                 A   T   Y       Y   C   A   K  
  RatNor_1_chr6 IGHV5-63*01 P V-REGION gDNA     gcc aca tat ... tac tgt gca aaa ag
                                                                                
  AABR03049003  IGHV5-63*01 P V-REGION gDNA     --- --- --- ... --- --- --- --- --

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
09/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet