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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                
                                                
                                                 1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                 E   V   Q   I   L   E   T   G   G       G   L   V   K   P   G   G   S   L   R 
  RatNor_2_chr6 IGHV6-20*01 P V-REGION gDNA     gag gtg caa att ttg gag act gga gga ... gga ttg gtg aag cct ggt ggt tcc ctg aga
                                                                                                                               
  AABR03049107  IGHV6-20*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                        _____________________CDR1-IMGT______________________    
                                                
                                                 21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                 L   S   C   A   T   S   G   F   N   F                       N   D   Y   F   M 
  RatNor_2_chr6 IGHV6-20*01 P V-REGION gDNA     ctt tct tgt gca acg tct gga ttc aat ttc ... ... ... ... ... aat gac tac ttc atg
                                                                                                                               
  AABR03049107  IGHV6-20*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- ---


                                                                                                                _______________C
                                                
                                                 40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                 H   W   V   R   *   A   P   G   K   G   L   E   W   V   A   E   V   R   N   K 
  RatNor_2_chr6 IGHV6-20*01 P V-REGION gDNA     cac tgg gtt cgt tag gct cca ggg aag ggg cta gaa tgg gtg gct gaa gta aga aac aaa
                                                                                                                               
  AABR03049107  IGHV6-20*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                DR2-IMGT________________                                                        
                                                
                                                 60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                 N   Y   N   Y   A   T   Y   Y   A   E   S   V   K       G   R   F   T   I   S 
  RatNor_2_chr6 IGHV6-20*01 P V-REGION gDNA     aat tat aat tat gca aca tat tat gcg gag tct gta aaa ... ggg aga ttc aca atc tca
                                                                                                                               
  AABR03049107  IGHV6-20*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                                
                                                
                                                 80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                 R   D   D   S   K   S   S   V   Y   L   Q   V   S   S   L   R   A   E   D   T 
  RatNor_2_chr6 IGHV6-20*01 P V-REGION gDNA     cga gac gat tcc aaa agc agt gtc tac ctg caa gtg agc agt tta aga gct gaa gac act
                                                                                                                               
  AABR03049107  IGHV6-20*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                        CDR3-IMG
                                                
                                                100 101 102 102A103 104 105 106 
                                                 A   I   Y       Y   C   T   R  
  RatNor_2_chr6 IGHV6-20*01 P V-REGION gDNA     gcc att tat ... tac tgt aca aga 
                                                                                
  AABR03049107  IGHV6-20*01 P V-REGION gDNA     --- --- --- ... --- --- --- --- 

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
09/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet