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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                
                                               
                                                1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                *   D   G   A   H   R   S   R   G       C   L   V   Q   S   G   N   S   L   K 
  RatNor_2_chr6 IGHV6-4*01 P V-REGION gDNA     tga gat gga gct cat aga agc agg gga ... tgc ttg gtg cag agt gga aat tcc cta aaa
                                                                                                                              
  AABR03049153  IGHV6-4*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                       _____________________CDR1-IMGT______________________    
                                               
                                                21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                I   S   C   S   T   S   W   F   P   F                       Y   D   Y   C   I 
  RatNor_2_chr6 IGHV6-4*01 P V-REGION gDNA     ata tcc tgc agc aca tct tgg ttt cct ttc ... ... ... ... ... tat gat tac tgt ata
                                                                                                                              
  AABR03049153  IGHV6-4*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- ---


                                                                                                               _______________C
                                               
                                                40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                K   W   I   S   Q   S   P   E   K   W   L   E   *   V   V   Q   T   S   T   K 
  RatNor_2_chr6 IGHV6-4*01 P V-REGION gDNA     aaa tgg atc agc cag tct cca gaa aag tgg ctg gag tga gtt gtt caa act tca aca aaa
                                                                                                                              
  AABR03049153  IGHV6-4*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                               DR2-IMGT________________                                                        
                                               
                                                60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                T       N   Y   V   T   Y   Y   *   E   S   V   K       G   *   F   I   I   S 
  RatNor_2_chr6 IGHV6-4*01 P V-REGION gDNA     act ... aat tat gta aca tac tat taa gag tct gta aaa ... ggc tga ttc atc atc tca
                                                                                                                              
  AABR03049153  IGHV6-4*01 P V-REGION gDNA     --- ... --- --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                               
                                               
                                                80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                R   D   D   S   K   G   S   A   Y   L   Q   M   N   R   L   R   D   E   D   T 
  RatNor_2_chr6 IGHV6-4*01 P V-REGION gDNA     aga gat gat tcc aaa ggc agt gcc tac ctg cag atg aac aga tta aga gat gaa gac act
                                                                                                                              
  AABR03049153  IGHV6-4*01 P V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                       _CDR3-IMGT__
                                               
                                               100 101 102 102A103 104 105 106 
                                                A   I   Y       Y   C   A   R  
  RatNor_2_chr6 IGHV6-4*01 P V-REGION gDNA     gcc att tat ... tat tgt gca aga ga
                                                                               
  AABR03049153  IGHV6-4*01 P V-REGION gDNA     --- --- --- ... --- --- --- --- --

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
09/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet