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When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

	
	
	                                                                                
                                                
                                                 1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                                 Q   V   T   L   K   E   S   G   P       G   I   L   Q   P   S   Q   T   L   S 
  RatNor_3_chr6 IGHV8-17*01 F V-REGION gDNA     cag gtt act ctg aaa gag tct ggc cct ... ggg ata ttg cag cct tcc cag acc ctc agt
                                                                                                                               
  AABR03049290  IGHV8-17*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---


                                                                        _____________________CDR1-IMGT______________________    
                                                
                                                 21  22  23  24  25  26  27  28  29  30  31  32 32.1 33  34  35  36  37  38  39 
                                                 L   T   C   S   F   S   G   F   S   L   S               T   S   G   I   C   V 
  RatNor_3_chr6 IGHV8-17*01 F V-REGION gDNA     ctg act tgc tct ttc tct ggg ttt tca ctg agc ... ... ... act tct ggt ata tgt gtg
                                                                                                                               
  AABR03049290  IGHV8-17*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- ... ... ... --- --- --- --- --- ---


                                                                                                                _______________C
                                                
                                                 40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                 S   W   I   R   Q   P   S   G   K   G   L   E   W   L   A   T   I   C   W   E 
  RatNor_3_chr6 IGHV8-17*01 F V-REGION gDNA     agc tgg att cgt cag cct tca ggg aag ggt ctg gag tgg ctg gca act att tgt tgg gag
                                                                                                                               
  AABR03049290  IGHV8-17*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                DR2-IMGT________________                                                        
                                                
                                                 60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                             D   S   K   G   Y   N   P   S   L   K       N   R   L   T   I   S 
  RatNor_3_chr6 IGHV8-17*01 F V-REGION gDNA     ... ... ... gat agt aag ggc tac aac cct tct ctg aag ... aac cgg ctc aca atc tcc
                                                                                                                               
  AABR03049290  IGHV8-17*01 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- ---


                                                                                                                                
                                                
                                                 80  81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 
                                                 K   D   T   S   N   N   Q   A   F   L   K   I   T   S   V   D   T   A   D   T 
  RatNor_3_chr6 IGHV8-17*01 F V-REGION gDNA     aag gac acc tcc aac aac caa gca ttc ctc aag atc acc agt gtg gac act gca gat acc
                                                                                                                               
  AABR03049290  IGHV8-17*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---


                                                                        ___CDR3-IMGT____
                                                
                                                100 101 102 102A103 104 105 106 107 
                                                 A   I   Y       Y   C   A   R   R  
  RatNor_3_chr6 IGHV8-17*01 F V-REGION gDNA     gcc ata tac ... tac tgt gct cgg aga g
                                                                                    
  AABR03049290  IGHV8-17*01 F V-REGION gDNA     --- --- --- ... --- --- --- --- --- -

This alignment of allele is generated by IMGT/OutilAllele (Patrice Duroux and Mehdi Yousfi).

Created:
09/02/2016
Last updated:
02/08/2016
Authors:
Mélanie Arrivet