IMGT Repertoire (IG and TR)
Alignment of alleles: Mouse IGKC (overview)
When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated
in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest
sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
Cysteine involved in the disulfide bridge are shown in purple.
STOP-CODON is indicated by an asterisk.
The IMGT taxon abbreviations are according to the IMGT Scientific chart.
Alleles are described at the species level.
1.8 1.7 1.6 1.5 1.4 1.3 1.2 1.1 1 2 3 4 5 6 7 8 9 10 11 12
R A D A A P T V S I F P P S S E
Musmus V00807 IGKC*01 F ... ... ... ... cgg gct gat gct gca cca act gta tcc atc ttc cca cca tcc agt gag
Musmus X67002 IGKC*02 F ... ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Musmus X67011 IGKC*03 F ... ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
V A
Mussax M21792 IGKC*01 F ... ... ... ... --- --- --- -t- --- --- --- -c- --- --- --- --- --- --- --- ---
V A N
Muspah M21793 IGKC*01 F ... ... ... ... --- --- --- -t- --- --- --- -c- --- --- --- --- --- --- -a- ---
S V A
Musmin M21794 IGKC*01 F ... ... ... ... --- t-- --- -t- --- --- --- -c- --- --- --- --g --- --- --- ---
V
Muscoo M21795 IGKC*01 F ... ... ... ... --- --- --- -t- --- --- --- --- --- --- --- --- --- --- --- ---
Musspr M21796 IGKC*01 F ... ... ... ... --- --- --- --- --- --- --a --- --- --- --- --- --- --- --- ---
_____AB_____ ____________
15.1 15.3
13 14 15 15.2 16 17 18 19 20 21 22 23 24 25 26 27 28 29
Q L T S G G A S V V C F L N N F Y
Musmus V00807 IGKC*01 F cag tta aca ... ... ... tct gga ggt gcc tca gtc gtg tgc ttc ttg aac aac ttc tac
Musmus X67002 IGKC*02 F --- --- --- ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ---
Musmus X67011 IGKC*03 F --- --- --- ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ---
A M
Mussax M21792 IGKC*01 F --- --- g-- ... ... ... --- --- --- --- --- --- --- --- --- a-- --- --- --- ---
A I
Muspah M21793 IGKC*01 F --- --- g-- ... ... ... --- --- --- --- --- a-- --- --t --- c-- --- --- --- ---
A M
Musmin M21794 IGKC*01 F --- --- g-- ... ... ... --- --- --- --- --- --- --- --- --- a-- --- --- --- ---
M
Muscoo M21795 IGKC*01 F --- --- --- ... ... ... --- --- --- --- --- --- --- --- --- a-- --- --- --- ---
Musspr M21796 IGKC*01 F --- --- --- ... ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ---
___________BC______________ _____________CD_________
45.1 45.3 45.5
30 31 34 35 36 37 38 39 40 41 42 43 44 45 45.2 45.4 45.6
P K D I N V K W K I D G S E R Q N
Musmus V00807 IGKC*01 F ccc ... ... aaa gac atc aat gtc aag tgg aag att gat ggc agt gaa cga caa aat ...
Musmus X67002 IGKC*02 F --- ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ...
R
Musmus X67011 IGKC*03 F --- ... ... -g- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ...
S V D
Mussax M21792 IGKC*01 F --- ... ... --- --- --- -g- --- --- --- --- g-- --- --- --- --- --- --- g-- ...
R V K D
Muspah M21793 IGKC*01 F --- ... ... -g- --- --- --- --- --- --- --- g-- --- --- --- --- aa- --- g-- ...
R N R D
Musmin M21794 IGKC*01 F --- ... ... -g- --- --- --- --- --- --- --- --- --- --- -a- --- --t -g- g-- ...
R G
Muscoo M21795 IGKC*01 F --- ... ... -g- --- --t --- --- --- --- --- --- --- --- --- --- --- --- gg- ...
R
Musspr M21796 IGKC*01 F --- ... ... -g- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ...
____ ___________________________DE_______________
45.7 84.1 84.3 84.5 84.7 85.6 85.4
77 78 79 80 81 82 83 84 84.2 84.4 84.6 85.7 85.5
G V L N S W T D Q D S K D S
Musmus V00807 IGKC*01 F ... ggc gtc ctg aac agt tgg act gat cag gac agc aaa gac ... ... ... ... ... agc
Musmus X67002 IGKC*02 F ... --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ---
Musmus X67011 IGKC*03 F ... --t --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ---
F E
Mussax M21792 IGKC*01 F ... --- t-- --- --- --- --- --- --a --- --- --- --- --- ... ... ... ... ... ---
E
Muspah M21793 IGKC*01 F ... --- --- --- --- --- --- --- --a --- --- --- --g --- ... ... ... ... ... ---
I T Y
Musmin M21794 IGKC*01 F ... --- a-- --- -c- --- -at --- --- --- --- --- --- --- ... ... ... ... ... ---
Muscoo M21795 IGKC*01 F ... --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ---
Musspr M21796 IGKC*01 F ... --t --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ---
____________ ___EF___
85.2 96.1
85.3 85.1 85 86 87 88 89 90 91 92 93 94 95 96 96.2 97 98 99
T Y S M S S T L T L T K D E Y E R H
Musmus V00807 IGKC*01 F acc tac agc atg agc agc acc ctc acg ttg acc aag gac gag tat ... ... gaa cga cat
Musmus X67002 IGKC*02 F --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... --- --- ---
Musmus X67011 IGKC*03 F --- --- --- --- --- --- --- --- --a --- --- --- --- --- --- ... ... --- --- ---
Mussax M21792 IGKC*01 F --- --- --- --- --- --- --- --- --a --- --- --- --t --- --- ... ... --- --- ---
A Q
Muspah M21793 IGKC*01 F --- --- --- --- --- --- --- --- --a --- --- --- -ca --- --- ... ... --- -a- ---
L
Musmin M21794 IGKC*01 F --- --- --- t-- --- --- --- --- --a --- --- --- --- --- --- ... ... --- --- ---
A Q
Muscoo M21795 IGKC*01 F --- --- --- --- --- --- --- --- --- --- --- --- -c- --- --- ... ... --- -a- ---
Musspr M21796 IGKC*01 F --- --- --- --- --- --- --- --- --a --- --- --- --- --- --- ... ... --- --- ---
_________________________FG________________________
100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
N S Y T C E A T H K T S T S P I V K
Musmus V00807 IGKC*01 F aac agc tat acc tgt gag gcc act cac aag aca ... ... tca act tca ccc att gtc aag
Musmus X67002 IGKC*02 F --- --- --- --- --- --- --- --- --- --- --- ... ... --- --- --- --- --c --- ---
Musmus X67011 IGKC*03 F --- --- --- --- --- --- --- --- --- --- --- ... ... --- --- --- --- --c --- ---
S
Mussax M21792 IGKC*01 F --- --- --- --- --- --- --- --- --t --- --g ... ... --- t-- --- --- --c --- ---
V S
Muspah M21793 IGKC*01 F --- --- --- --- --- --- --- gt- --t --a --- ... ... --- -g- --- --- --c --- ---
Musmin M21794 IGKC*01 F --- --- --- --- --- --- --- --- --- --- --g ... ... --- --- --g --- --c --- ---
R A
Muscoo M21795 IGKC*01 F --- --- --c --- --- --- --- --- --- -g- --- ... ... --- g-- --- --- --c --- ---
Musspr M21796 IGKC*01 F --- --- --- --- --- --- --- --- --- --- --- ... ... --- --- --- --- --- --- ---
120 121 122 123 124 125 126
S F N R N E C
Musmus V00807 IGKC*01 F agc ttc aac agg aat gag tgt
Musmus X67002 IGKC*02 F --- --- --- --- --- --- ---
Musmus X67011 IGKC*03 F --- --- --- --- --- --- ---
Mussax M21792 IGKC*01 F --- --- --- --- --- --- ---
Muspah M21793 IGKC*01 F --- --- --- --- --- --- ---
Musmin M21794 IGKC*01 F --- --- --- --- --- --- ---
Muscoo M21795 IGKC*01 F --- --- --- --- --- --- ---
Musspr M21796 IGKC*01 F --- --- --- --- --- --- ---
Last updated: Monday, 11-Jul-2011 12:56:58 CEST
Authors: Géraldine Folch and Delphine Guiraudou
Editor: Chantal Ginestoux
Contact: Marie-Paule Lefranc
Software material and data coming from IMGT server may be used for academic research only,
provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics
information system® http://www.imgt.org
(founder and director: Marie-Paule Lefranc, Montpellier, France)."
References to cite:
Lefranc, M.-P. et al.,
Nucleic Acids Research, 27, 209-212 (1999)
Cover of NAR;
Ruiz, M. et al.,
Nucleic Acids Research, 28, 219-221 (2000);
Lefranc, M.-P.,
Nucleic Acids Research, 29, 207-209 (2001);
Lefranc, M.-P.,
Nucleic Acids Res., 31, 307-310 (2003);
Lefranc, M.-P. et al.,
In Silico Biol., 5, 0006 (2004) [Epub],
5, 45-60 (2005);
Lefranc, M.-P. et al.,
Nucleic Acids Res., 33, D593-D597 (2005)
Full text;
Lefranc, M.-P. et al.,
Nucleic Acids Research 2009 37:
D1006-D1012; doi:10.1093/nar/gkn838
Full text.
For any other use please contact Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr.
IMGT founder and director: Marie-Paule Lefranc
Marie-Paule.Lefranc@igh.cnrs.fr
Bioinformatics manager: Véronique Giudicelli
Veronique.Giudicelli@igh.cnrs.fr
Computer manager: Patrice Duroux
Patrice.Duroux@igh.cnrs.fr
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