Alignment of alleles: Mouse (Mus musculus, Mus spretus, Mus pahari) TRBC1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt).

Exon names are shown between parentheses on the first line.
The Cysteines involved in the TR EX1 intrachain disulfide bridge are shown with a larger letter C in purple.
Other Cysteines (including those involved in the interchain disulfide bridge) are shown with a larger letter C in black.
STOP-CODON is indicated by an asterisk.

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

Mouse (Mus musculus) TRBC1
 
                                      1.7 1.6 1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                       E   D   L   R   N   V   T   P   P   K   V   S   L   F   E   P   S   K 
  M26053  ,TRBC1*01, (EX1)          (G)AG GAT CTG AGA AAT GTG ACT CCA CCC AAG GTC TCC TTG TTT GAG CCA TCA AAA
                                                                                                               
  AE000665,TRBC1*01                 (-)-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                              ___AB_______                                            ________
                                             15.1    15.3                                                    
                               12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                               A   E   I   A   N           K   Q   K   A   T   L   V   C   L   A   R   G   F 
  M26053  ,TRBC1*01           GCA GAG ATT GCA AAC ... ... AAA CAA AAG GCT ACC CTC GTG TGC TTG GCC AGG GGC TTC
                                                                                                               
  AE000665,TRBC1*01           --- --- --- --- --- ... ... --- --- --- --- --- --- --- --- --- --- --- --- ---

                              _________BC_____________________                            ___________CD_______
                                                                                         45.1    45.3    45.5
                               29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                               F   P           D   H   V   E   L   S   W   W   V   N   G   K   E   V   H   S 
  M26053  ,TRBC1*01           TTC CCT ... ... GAC CAC GTG GAG CTG AGC TGG TGG GTG AAT GGC AAG GAG GTC CAC AGT
                                                                                                               
  AE000665,TRBC1*01           --- --- ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                              ________                                _________________________DE_____________
                                 45.7                                84.1    84.3    84.5    84.7    85.6    
                             45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                       G   V   S   T   D   P   Q   A   Y   K   E   S   N                     
  M26053  ,TRBC1*01           ... ... GGG GTC AGC ACG GAC CCT CAG GCC TAC AAG GAG AGC AAT ... ... ... ... ...
                                                                                                               
  AE000665,TRBC1*01           ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ...

                              ________________                                                _EF_____        
                             85.4    85.2                                                    96.1            
                                 85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                               Y   S   Y   C   L   S   S   R   L   R   V   S   A   T   F   W   H       N   P 
  M26053  ,TRBC1*01           TAT AGC TAC TGC CTG AGC AGC CGC CTG AGG GTC TCT GCT ACC TTC TGG CAC ... AAT CCT
                                                                                                               
  AE000665,TRBC1*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... --- ---

                                                      _______________________________________________FG______    
                                                                                111.1   111.3   111.5   112.6                   
                               99 100 101 102 103 104 105 106 107 108 109 110 111   111.2   111.4   111.6
                               R   N   H   F   R   C   Q   V   Q   F   H   G   L   S   E   E   D   K   W   P 
  M26053  ,TRBC1*01           CGC AAC CAC TTC CGC TGC CAA GTG CAG TTC CAT GGG CTT TCA GAG GAG GAC AAG TGG CCA
                                                                                                               
  AE000665,TRBC1*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                            _____________________________________________                                             
                                112.4   112.2                                                                      
                            112.5   112.3   112.1 112 113 114 115 116 117 118 119 120 121 122 123 124 125 
                               E   G   S   P   K   P   V   T   Q   N   I   S   A   E   A   W   G   R   A  
  M26053  ,TRBC1*01           GAG GGC TCA CCC AAA CCT GTC ACA CAG AAC ATC AGT GCA GAG GCC TGG GGC CGA GCA G
                                                                                                            
  AE000665,TRBC1*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -

                                1   2   3   4   5   6
                               D   C   G   I   T   S
  M26054  ,TRBC1*01, (EX2)     AC TGT GGG ATT ACC TCA G

  AE000665,TRBC1*01            -- --- --- --- --- --- -

                                1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                               A   S   Y   Q   Q   G   V   L   S   A   T   I   L   Y   E   I   L   L   G   K
  M26055  ,TRBC1*01, (EX3)     CA TCC TAT CAA CAA GGG GTC TTG TCT GCC ACC ATC CTC TAT GAG ATC CTG CTA GGG AAA

  AE000665,TRBC1*01            -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                               21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36
                               A   T   L   Y   A   V   L   V   S   T   L   V   V   M   A   M
  M26055  ,TRBC1*01           GCC ACC CTG TAT GCT GTG CTT GTC AGT ACA CTG GTG GTG ATG GCT ATG

  AE000665,TRBC1*01           --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                1   2   3   4   5   6
                               V   K   R   K   N   S   *
  M26056  ,TRBC1*01, (EX4)    GTC AAA AGA AAG AAT TCA

  AE000665,TRBC1*01           --- --- --- --- --- ---
  
Mouse (Mus spretus) TRBC1
                                
                                      1.7 1.6 1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                       E   D   L   R   N   V   T   P   P   K   V   S   L   F   E   P   S   R 
  M28759  ,TRBC1*01, (EX1)          (G)AG GAT CTG AGA AAT GTG ACT CCA CCC AAG GTC TCC TTG TTT GAG CCA TCA AGA

                                              ___AB_______                                            ________
                                             15.1    15.3                                                    
                               12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                               A   E   I   A   N           K   Q   K   A   T   L   V   C   L   A   R   G   F 
  M28759  ,TRBC1*01           GCA GAG ATT GCA AAC ... ... AAA CAA AAG GCT ACC CTC GTG TGC TTG GCC AGG GGC TTC

                              _________BC_____________________                            ___________CD_______
                                                                                         45.1    45.3    45.5
                               29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                               F   P           D   H   V   E   L   S   W   W   V   N   G   K   E   V   H   S 
  M28759  ,TRBC1*01           TTC CCT ... ... GAC CAT GTG GAG CTG AGC TGG TGG GTG AAT GGC AAG GAG GTC CAC AGT

                              ________                                _________________________DE_____________
                                 45.7                                84.1    84.3    84.5    84.7    85.6    
                             45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                       G   V   S   T   D   P   Q   A   Y   K   E   S   N                     
  M28759  ,TRBC1*01           ... ... GGG GTC AGC ACG GAC CCT CAG GCC TAC AAG GAG AGC AAT ... ... ... ... ...

                              ________________                                                _EF_____        
                             85.4    85.2                                                    96.1            
                                 85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                               Y   S   Y   C   L   S   S   R   L   R   V   S   A   T   F   W   H       N   P 
  M28759  ,TRBC1*01           TAT AGC TAC TGC CTG AGC AGC CGC CTG AGG GTC TCT GCT ACC TTC TGG CAC ... AAT CCT

                                                      ________________________________________________FG_____    
                                                                                111.1   111.3   111.5   112.6                    
                               99 100 101 102 103 104 105 106 107 108 109 110 111   111.2   111.4   111.6 
                               R   N   H   F   R   C   Q   V   Q   F   H   G   L   S   E   E   D   K   W   P 
  M28759  ,TRBC1*01           CGC AAC CAC TTC CGC TGC CAA GTG CAG TTC CAT GGG CTT TCA GAG GAG GAC AAG TGG CCA

                            _____________________________________________                                              
                                112.4   112.2                                                                      
                            112.5   112.3   112.1 112 113 114 115 116 117 118 119 120 121 122 123 124 125 
                               E   G   S   P   K   P   V   T   Q   N   I   S   A   E   A   W   G   R   A  
  M28759  ,TRBC1*01           GAG GGC TCA CCC AAA CCT GTC ACA CAG AAC ATC AGT GCA GAG GCC TGG GGC CGA GCA G

                                1   2   3   4   5   6
                               D   C   G   I   T   S
  M28761  ,TRBC1*01, (EX2)     AC TGT GGG ATT ACC TCA G

                                1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                               A   S   Y   Q   Q   G   V   L   S   A   T   I   L   Y   E   I   L   L   G   K
  M28763  ,TRBC1*01, (EX3)     CA TCC TAT CAA CAA GGG GTC TTG TCT GCC ACC ATC CTC TAT GAG ATC CTG CTA GGG AAA

                               21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36
                               A   T   L   Y   A   V   L   V   S   T   L   V   V   M   A   M
  M28763  ,TRBC1*01           GCC ACC CTG TAT GCT GTG CTT GTC AGT ACA CTG GTG GTG ATG GCT ATG 

                                1   2   3   4   5   6
                               V   K   R   K   N   S   *
  M28765  ,TRBC1*01, (EX4)    GTC AAA AGA AAG AAT TCA   

Mouse (Mus pahari) TRBC1
            
                                      1.7 1.6 1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                       Q   D   L   R   N   V   T   P   P   K   V   S   L   F   E   P   S   E 
  M28600  ,TRBC1*01,(EX1) (1)       (C)AG GAT CTG AGA AAT GTG ACT CCA CCC AAG GTC TCC TTG TTT GAG CCA TCA GAA

                                              ___AB_______                                            ________
                                             15.1    15.3                                                    
                               12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                               A   E   I   A   D           K   Q   K   #   T   L   V   C   L   A   R   G   F 
  M28600  ,TRBC1*01 (1)       GCA GAG ATT GCT GAC ... ... AAA CAA AAG .CT ACC CTC GTG TGC TTG GCC AGG GGC TTC

                              _________BC_____________________                            ___________CD_______
                                                                                         45.1    45.3    45.5
                               29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                               F   P           D   H   V   E   L   S   W   W   V   N   G   K   E   V   H   S 
  M28600  ,TRBC1*01 (1)       TTC CCT ... ... GAC CAT GTG GAG CTG AGC TGG TGG GTG AAT GGC AAG GAG GTC CAC AGT

                              ________                                _________________________DE_____________
                                 45.7                                84.1    84.3    84.5    84.7    85.6    
                             45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                       G   V   S   T   D   P   Q   A   Y   K   E   S   N                     
  M28600  ,TRBC1*01 (1)       ... ... GGG GTC AGC ACG GAC CCT CAG GCC TAC AAG GAG AGC AAT ... ... ... ... ...

                              ________________                                                _EF_____        
                             85.4    85.2                                                    96.1            
                                 85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                               N   S   Y   C   L   S   S   R   L   R   V   S   A   T   F   W   H       N   P 
  M28600  ,TRBC1*01 (1)       AAC AGC TAC TGC CTG AGC AGC CGC CTG AGG GTT TCT GCG ACC TTC TGG CAC ... AAT CCT

                                                      __________________________________________________FG___    
                                                                                111.1   111.3   111.5   112.6                    
                               99 100 101 102 103 104 105 106 107 108 109 110 111   111.2   111.4   111.6
                               R   N   H   F   R   C   Q   V   Q   F   Y   G   L   E   E   E   D   K   W   P 
  M28600  ,TRBC1*01 (1)       CGC AAC CAC TTC CGC TGC CAA GTA CAG TTC TAT GGG CTT GAA GAG GAG GAC AAG TGG CCA

                            _____________________________________________                                              
                                112.4   112.2                                                                      
                            112.5   112.3   112.1 112 113 114 115 116 117 118 119 120 121 122 123 124 125 
                               E   G   S   T   K   P   V   T   Q   N   I   S   A   E   A   W   G   R   A  
  M28600  ,TRBC1*01 (1)       GAG GGC TCA ACC AAA CCT GTC ACA CAG AAC ATC AGT GCA GAG GCC TGG GGC CGA GCA G




1 2 3 4 5 6 D C G I T S M28600 ,TRBC1*01, (EX2) AT TGT GGG ATT ACC TCA G

                                1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                               A   S   Y   Q   Q   G   V   L   S   A   T   I   L   Y   E   I   L   L   G   K
  M28600  ,TRBC1*01, (EX3)     CA TCC TAT CAG CAA GGG GTC TTG TCT GCC ACC ATC CTT TAT GAG ATC CTG CTA GGG AAG

                               21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36
                               A   T   L   Y   A   V   L   V   S   M   L   V   V   M   A   M
  M28600  ,TRBC1*01           GCC ACC CTG TAT GCT GTG CTT GTC AGT ATG CTG GTG GTG ATG GCT ATG 

                                1   2   3   4   5   6
                               V   K   R   K   S   S   *
  M28600  ,TRBC1*01, (EX4)    GTC AAA AGA AAG AGT TCC 
#:frameshift
IMGT note:
(1) The DELETION of the nucleotide G at position 55 (in IMGT unique numbering) leads to a frameshift in EX1.


Created: 26/10/1999
Last updated: Friday, 27-May-2016 21:03:16 CEST
Author: Nathalie Bosc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

CNRS Université de Montpellier European Commission
IMGT® Founder and Executive Director Emeritus:
Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr
IMGT® Director:
Sofia Kossida Sofia.Kossida@igh.cnrs.fr
Bioinformatics manager:
Véronique Giudicelli Veronique.Giudicelli@igh.cnrs.fr
Computer manager:
Patrice Duroux Patrice.Duroux@igh.cnrs.fr
Webmaster:
Amélie Houles

Citing IMGT | Warranty disclaimer and copyright notice | Privacy policy and advertisement policy

© Copyright 1995-2017 IMGT®, the international ImMunoGeneTics information system®