Alignment of alleles: Mouse (Mus musculus) TRGC4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt).

Exon names are shown between parentheses on the first line.
The Cysteines involved in the TR EX1 intrachain disulfide bridge are shown with a larger letter C in purple.
Other Cysteines (including those involved in the interchain disulfide bridge) are shown with a larger letter C in black.
STOP-CODON is indicated by an asterisk.

   
                                               1.8 1.7 1.6 1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                D   K   R   T   D   S   D   F   S   P   K   P   T   I   F   L   P   S   A 
  AF021335,TRGC4*01,Cgamma4 (EX1)            (G)AC AAA CGC ACT GAC TCA GAC TTT TCT CCC AAG CCT ACT ATT TTC CTT CCT TCT GCT
                                                                                                                 
  L02939  ,TRGC4*01,Cgamma4      

                                                           ___AB_______                                            ________
                                                          15.1    15.3                                                    
                                            12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                            A   E   T   N   L           H   K   A   G   T   Y   L   C   L   L   E   K   F 
  AF021335,TRGC4*01,Cgamma4                GCT GAA ACA AAT CTC ... ... CAT AAG GCT GGG ACC TAC CTT TGT CTC CTT GAA AAG TTC
                                                                                                                 
  L02939  ,TRGC4*01,Cgamma4       

                                           _________BC_____________________                            ___________CD_______
                                                                                                      45.1    45.3    45.5
                                            29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                            F   P           E   V   I   R   V   Y   W   K   E   K   D   G   E   K   I   L 
  AF021335,TRGC4*01,Cgamma4                TTT CCT ... ... GAA GTC ATA AGG GTG TAT TGG AAA GAA AAG GAT GGT GAA AAG ATT CTG
                                                                                                                 
  L02939  ,TRGC4*01,Cgamma4
                                           ________                                _________________________DE_____________
                                              45.7                                84.1    84.3    84.5    84.7    85.6    
                                          45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                                    E   S   Q   E   G   N   T   I   K   T   N   D                         
  AF021335,TRGC4*01,Cgamma4                ... ... GAA TCC CAG GAA GGA AAC ACC ATA AAA ACT AAT GAC ... ... ... ... ... ...
                                                                                                                 
  L02939  ,TRGC4*01,Cgamma4       

                                           ________________                                                _EF_____        
                                          85.4    85.2                                                    96.1            
                                              85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                                R   Y   M   K   F   S   W   L   T   V   T   E   D                   S   M 
  AF021335,TRGC4*01,Cgamma4                ... AGA TAC ATG AAA TTT AGT TGG CTG ACG GTG ACT GAA GAT ... ... ... ... TCA ATG
                                                                                                                 
  L02939  ,TRGC4*01,Cgamma4
                                                                   _______________________FG___________________________    
                                                                                                                          
                                            99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                            A   K   E   H   S   C   I   V   K   H   E   N   N   K   R   G   V   D   Q   E 
  AF021335,TRGC4*01,Cgamma4                GCT AAA GAA CAT AGT TGC ATT GTC AAA CAC GAA AAC AAC AAA AGA GGA GTT GAC CAA GAG
                                                                                                                 
  L02939  ,TRGC4*01,Cgamma4                            --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                                 
                                           119 120 121 122 123 124 125 126
                                            I   L   F   P   P   I   G   K  
  AF021335,TRGC4*01,Cgamma4                ATT CTG TTT CCT CCC ATA GGT AAA G
                                                                  
  L02939  ,TRGC4*01,Cgamma4                --- --- --- --- --- --- --- --- -



                                             1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18
                                            A   F   T   T   I   N   V   N   P   R   D   S   V   L   R   H   E   N
  L02340  ,TRGC4*01,Cgamma4 (EX2A)          CT TTC ACA ACT ATT AAT GTT AAT CCC AGA GAT AGT GTT TTG CGG CAT GAA AAT G

  AF021335,TRGC4*01,Cgamma4                 -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -



                                             1   2   3   4   5   6   7   8   9  10  11  12  13  14  15
                                            V   N   N   A   T   D   L   E   D   C   M   K   G   R   K
  L02341  ,TRGC4*01,Cgamma4 (EX2B)          TT AAC AAT GCT ACT GAT CTG GAA GAT TGC ATG AAA GGA AGA AAG G

  AF021335,TRGC4*01,Cgamma4                 -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -



                                             1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                            D   M   L   Q   L   Q   V   T   T   T   Y   A   F   Y   T   Y   L   I   L   F
  AF021335,TRGC4*01,Cgamma4 (EX3)           AT ATG TTG CAG CTT CAG GTC ACC ACC ACC TAT GCA TTC TAC ACC TAC CTC ATC CTG TTC

                                            21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                            F   K   S   M   V   H   L   A   F   V   V   F   C   L   F   R   R   A   A   M
  AF021335,TRGC4*01,Cgamma4                TTC AAG AGC ATG GTC CAC TTG GCC TTC GTT GTA TTC TGT CTA TTC AGA AGA GCA GCC ATG

                                            41  42  43  44  45  46  47
                                            S   C   D   D   Q   R   S   *
  AF021335,TRGC4*01,Cgamma4                TCC TGT GAT GAT CAA CGT TCA

  


Created: 26/02/2001
Last updated: Tuesday, 03-Apr-2012 08:20:23 CEST
Authors: Géraldine Folch and Nathalie Bosc

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