IMGT Repertoire (IG and TR)

Alignment of alleles: Rabbit (Oryctolagus cuniculus) IGHV1S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                   
                                    
                                    
                                     1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                     Q   E   Q   L   K   E   S   G   G       R   L   V   M   P   G   G   I   L   T 
  AY386694 IGHV1S1*01 F             cag gag cag ctg aag gag tcc ggg ggt ... cgt ctg gtc atg cct gga gga atc ctg aca


                                                            ___________________CDR1-IMGT____________________        
                                    
                                     21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                     L   T   C   T   A   S   G   S   N   I                   S   S   Y   G   V   S 
  AY386694 IGHV1S1*01 F             ctc acc tgc aca gcc tct gga tcc aac atc ... ... ... ... agt agc tat gga gtg agc


                                                                                                _______________CDR2-

                                    
                                     41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                     W   F   R   Q   A   P   G   K   G   L   E   W   I   R   Y   I   S   Y   G     
  AY386694 IGHV1S1*01 F             tgg ttc cgc cag gct cca ggg aag ggg ctc gaa tgg ata aga tac att agt tat ggt ...


                                    IMGT________________                                                            
                                    
                                     61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                             G   S   A   Y   Y   K   S   W   V   K       G   R   F   T   I   S   K 
  AY386694 IGHV1S1*01 F             ... ... ggt agc gca tac tac aag agc tgg gtg aaa ... ggc cga ttc acc atc tcc aaa


                                    
                                    
                                     81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                     T   S   S           T   V   D   L   K   M   T   S   L   T   A   S   D   T   A 
  AY386694 IGHV1S1*01 F             acc tcg agc ... ... acg gtg gat ctg aaa atg acc agt ctg aca gcc tcg gac acg gcc


                                                    CDR3-IMGT    
                                    
                                    101 102 103 104 105 106 

                                     T   Y   F   C   A   R  
  AY386694 IGHV1S1*01 F             acc tat ttc tgt gcg aga ga

This alignment of allele is generated by IMGT/OutilAllele.

Created: 15/09/2010
Author: Claire Poiron
Editor: Chantal Ginestoux

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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