IMGT Repertoire (IG and TR)

Alignment of alleles: Rabbit (Oryctolagus cuniculus) IGHV1S40

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                                               
                                    
                                      1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  17  18  19  20 
                                      Q       S   L   E   E   S   G   G       D   L   V   K   P   G   A   S   L   T 
  M93173   IGHV1S40*01 F             cag ... tcg ttg gag gag tcc ggg gga ... gac ctg gtc aag cct ggg gca tcc ctg aca


                                                             ___________________CDR1-IMGT____________________        
                                     
                                      21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40 
                                      L   T   C   T   A   S   G   F   S   F   S               S   S   Y   Y   M   C 
  M93173   IGHV1S40*01 F             ctc acc tgc aca gcc tct gga ttc tcc ttc agt ... ... ... agc agc tac tac atg tgc


                                                                                                 _______________CDR2-

                                     
                                      41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                      W   V   R   Q   A   P   G   K   G   L   E   W   I   A   C   I   Y   A   G   S 
  M93173   IGHV1S40*01 F             tgg gtc cgc cag gct cca ggg aag ggg ctg gag tgg atc gca tgc att tat gct ggt agt


                                     IMGT________________                                                            
                                     
                                      61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80 
                                          S   G   S   T   Y   Y   A   S   W   A   K       G   R   F   T   I   S   K 
  M93173   IGHV1S40*01 F             ... agt ggt agc act tac tac gcg agc tgg gcg aaa ... ggc cga ttc acc atc tcc aaa


                                     
                                     
                                      81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100 
                                      T   S   S       T   T   V   T   L   Q   M   T   S   L   T   A   A   D   T   A 
  M93173   IGHV1S40*01 F             acc tcg tcg ... acc acg gtg act ctg caa atg acc agt ctg aca gcc gcg gac acg gcc


                                                     CDR3-IMGT    
                                     
                                     101 102 103 104 105 106 

                                      T   Y   F   C   A   R  
  M93173   IGHV1S40*01 F             acc tat ttc tgt gcg aga ga

This alignment of allele is generated by IMGT/OutilAllele.

Created: 15/09/2010
Author: Claire Poiron
Editor: Chantal Ginestoux

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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