Alignment of alleles: Atlantic salmon (Salmo salar) IGHJ segments


Note that, so far, only one allele has been described for each J-GENE. Duplicated J-SEGMENTs [Hordvik, I. et al., Mol. Immunol., 34, 631-639 (1997)] are aligned.

IGHJ1-1 and IGHJ2-1

                                        1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16
                                       Y   Y   F   D   Y   W   G   K   G   T   Q   V   T   I   T   S
  Y12391  ,IGHJ1-1*01              AT TAC TAT TTC GAC TAC TGG GGG AAA GGG ACC CAA GTC ACG ATA ACT TCT G

  Y12392  ,IGHJ2-2*01              -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -

IGHJ1-2 and IGHJ2-2

                                        1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16
                                       N   Y   F   D   Y   W   G   K   G   T   M   V   T   V   S   T
  Y12391  ,IGHJ1-2*01              AC AAC TAC TTT GAC TAC TGG GGG AAA GGG ACC ATG GTG ACC GTG TCC ACA G

  Y12392  ,IGHJ2-2*01              -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -        

IGHJ1-3 and IGHJ2-3

                                         1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16
                                        N   A   F   D   H   W   G   K   G   T   M   V   T   V   S   S
  Y12391  ,IGHJ1-3*01               AC AAT GCT TTT GAC CAC TGG GGG AAA GGC ACA ATG GTT ACC GTT TCA TCA G
                                        H               Y
  Y12392  ,IGHJ2-3*01               -- C-- --- --- --- T-- --- --- --- --- --- --- --- --- --- --- --- -

IGHJ1-4 and IGHJ2-4

                                           1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16
                                          Y   G   F   D   Y   W   G   K   G   T   M   V   T   V   S   S
  Y12391  ,IGHJ1-4*01                 AC TAC GGT TTT GAC TAC TGG GGG AAA GGG ACA ATG GTT ACA GTT TCA TCA G

  Y12392  ,IGHJ2-4*01                 -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -

IGHJ1-5 and IGHJ2-5

                                         1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17
                                        D   A   A   F   D   Y   W   G   Q   G   T   I   V   T   V   S   L
  Y12391  ,IGHJ1-5*01                  GAC GCT GCT TTT GAC TAC TGG GGT CAG GGT ACA ATA GTA ACC GTT TCA TTA G

  Y12392  ,IGHJ2-5*01                  --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -


Created: 06/01/1999
Author: Sylvaine Artero

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