Alignment of alleles: Three spined stickleback (Gasterosteus aculeatus) IGIC1S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Cysteine involved in the disulfide bridge are shown in purple.
STOP-CODON is indicated by an asterisk.

                                                                                                               
                                                        1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                         S   D   V   R   P   T   L   T   V   L   P   P   S   R 
  AY278356,IGIC1S1,(cDNA)                             (A)GT GAT GTC CGG CCC ACC CTG ACG GTG CTG CCC CCC TCC AGG

                                                ___AB_______                                            ________
                                               15.1    15.3                                                    
                                 12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                 E   E   L   Q               Q   G   T   A   T   L   V   C   L   A   D   K   G 
  AY278356,IGIC1S1,(cDNA)       GAG GAG CTG CAG ... ... ... CAG GGG ACG GCC ACG CTG GTG TGC CTG GCC GAC AAG GGC

                                _________BC_____________________                            ___________CD_______
                                                                                           45.1    45.3    45.5
                                 29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                 F   P           S   D   W   S   L   A   W   K   V   D   G   S   S   S   S   W 
  AY278356,IGIC1S1,(cDNA)       TTC CCC ... ... TCC GAC TGG AGT CTG GCC TGG AAG GTG GAC GGC AGC AGC AGC AGC TGG

                                ________                                _________________________DE_____________
                                   45.7                                84.1    84.3    84.5    84.7    85.6    
                               45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                         E   E   S   R   S   P   G   V   L   G   G   G                         
  AY278356,IGIC1S1,(cDNA)       ... ... GAG GAG AGC CGG AGC CCC GGG GTG CTG GGG GGG GGC ... ... ... ... ... ...

                                ________________                                                _EF_____        
                               85.4    85.2                                                    96.1            
                                   85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                 A   L   Y   S   W   S   S   T   L   R   L   P   A   N   Q   W           A   K 
  AY278356,IGIC1S1,(cDNA)       GCC CTC TAC AGC TGG AGC AGC ACC CTG AGG CTC CCT GCA AAC CAG TGG ... ... GCC AAG

                                                        _______________________FG___________________________    
                                                                                                               
                                 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                 V   G   S   V   T   C   E   A   T   Q   G               F   Q   T   A   L   L 
  AY278356,IGIC1S1,(cDNA)       GTG GGC TCC GTG ACC TGT GAG GCC ACC CAG GGC ... ... ... TTC CAG ACT GCG CTT TTA

                                                                       
                                119 120 121 122 123 124 125 126 127 128
                                 E   T   L   R   R   D   Q   C   S   Q   *
  AY278356,IGIC1S1,(cDNA)       GAG ACG CTG AGG AGA GAC CAG TGT TCC CAG 




This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 08/10/2003
Author: Nathalie Bosc

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