Alignment of alleles: Five-ray yellowtail (Seriola quinqueradiata) IGIV1S38

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   V   T   L   T   Q   S   G   A       V   S   S   A   L   G   G   S   V   T 
  AB062637,IGIV1S38*01          CAG GTC ACA CTG ACT CAG TCT GGA GCA ... GTG AGC TCT GCT CTG GGA GGC TCC GTC ACC
                                                                                                               
  AB062640,IGIV1S38*01          --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---
                                                                                                               
  AB062663,IGIV1S38*01          --- --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- ---

                                                        _________________CDR1-IMGT______________________        
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   S   C   K   T   S   Q   A   V   Y   T   W   S   S   N   H   A       L   A 
  AB062637,IGIV1S38*01          ATC AGC TGT AAG ACC AGT CAG GCT GTT TAT ACA TGG AGC AGC AAC CAT GCG ... TTA GCC
                                                                                                               
  AB062640,IGIV1S38*01          --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... --- ---
                                                                                                               
  AB062663,IGIV1S38*01          --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... --- ---

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   R   D   G   E   K   T   K   L   L   I   Y   Y   A   S         
  AB062637,IGIV1S38*01          TGG TAC CAA CAG AGA GAT GGA GAA AAA ACT AAA CTC CTT ATT TAC TAT GCT TCC ... ...
                                                                                                               
  AB062640,IGIV1S38*01          --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ...
                                                                                                               
  AB062663,IGIV1S38*01          --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ...

                                GT__________________                                                            
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     T   Q   E   S   G   I   P       G   R   F   T   G   S   G 
  AB062637,IGIV1S38*01          ... ... ... ... ... ACT CAA GAA TCA GGA ATT CCA ... GGT CGT TTT ACA GGC AGT GGA
                                                                                                               
  AB062640,IGIV1S38*01          ... ... ... ... ... --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---
                                                                                                               
  AB062663,IGIV1S38*01          ... ... ... ... ... --- --- --- --- --- --- --- ... --- --- --- --- --- --- ---

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                         S   N   S   D   F   T   L   T   I   S   G   V   Q   T   E   D   A   A 
  AB062637,IGIV1S38*01          ... ... TCA AAC TCT GAC TTC ACT CTG ACC ATC AGT GGA GTC CAG ACT GAA GAT GCA GCA
                                                                                                               
  AB062640,IGIV1S38*01          ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
                                                                                                               
  AB062663,IGIV1S38*01          ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                _______________CDR3-IMGT____________________
                                101 102 103 104 105 106 107 108 109 110 111 112 113 114 115
                                 V   Y   Y   C   Q   S   F   H   Y   I   N   S   Q   Y   V  
  AB062637,IGIV1S38*01          GTT TAC TAC TGT CAG AGT TTT CAC TAT ATC AAC AGT CAG TAT GTG  #c
                                                                                            
  AB062640,IGIV1S38*01          --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---  #c
                                                                                            
  AB062663,IGIV1S38*01          --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---  #c


#c: rearranged cDNA


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/05/2003
Author: Nathalie Bosc

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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