IMGT Web resources: IMGT repertoire

Protein display: Rainbow trout (Oncorhynchus mykiss) TRA V-REGIONs

Only the *01 allele of each functional, ORF and in-frame pseudogene V-REGION is shown.

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CH-S and in pages edited before 14/10/2009).

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      TRAV                          FR1-IMGT           CDR1-IMGT       FR2-IMGT      CDR2-IMGT                 FR3-IMGT                     CDR3-IMGT
      gene                           (1-26)             (27-38)        (39-55)        (56-65)                  (66-104)                     (105-115)
__________________________ __________________________ ____________ _________________ __________ __________________________________________ ___________
                           1       10        20         30         40        50         60         70        80  84ABC     90        100        110
                           .........|.........|...... ...|........ .|.........|..... ....|..... ....|.........|............|.........|.... .....|.....

 #c U50918  ,TRAV1S1       EDTVIQPPGDVTATEGGQVTLDCQFD AVNTNNLY.... LFWYKHELHGFPKFMLG LFSFRST... NATGYE.....ERFDAHLDKDSKSVPLTIQRVQLSDSAVYYC AL
 #c U50917  ,TRAV2S1       QETITPVKPEVNALQGTDITLSCNYK GNVNN....... LQWYRQYPGSRPECLLW ILQSSMHVQ. KQSITT.....PRHTGRLNEEKTRVDLMISSVELEDSALYHC AL
 #c U50916  ,TRAV2S2       QETITPVKPEVNALQGTDITLSCNYK GDVNN....... LRWYRQYPGSRPECLLL ILPTNKYVQ. NTSITT.....PRHTGRLNEEKTRVDLMISSVELEDSALYHC AL
 #c U50919  ,TRAV2S3       QETITPVKPEVNALQGTDITLSCNYK GKIFN....... LQWYRQYPGSRPECLLL ILPTNKYAQ. NTSITT.....PRHTGRLNEEKTRVDLMISSVELEDSALYHC AL
 #c U50991  ,TRAV2S4       QETITPVKPQVNALQGTDITLSCNYK GDVNN....... LQWYRQYPGSRPECLLL IVTTNKYVQ. NTSITT.....PRHTGRLNEEKTRVDLIISSVELEDSALYHC AL
 #c U50920  ,TRAV3S1       EQVLTPYSDVEVASERDRVTLSCNYS SGDT........ LQWYRQYPNSAPQLLVN .......... EYVDIT.....PGFTLNHDKKAKRVDLEISSAEVTDSALYYC AL
 #c U50988  ,TRAV4S1       HDEIQPTAKIMYGDKGDFVTLSCNYS GSPYN....... LQWYRQYPRSAPKFLLL TTVSSNPSVV NATPPY.....PHLSIKLNKERTRLDLEISSAVGTDSALYYC AL
 #c U50989  ,TRAV5S1       GDRVLQPKGVEDGCRRGTITLVCHYE TDDPSPY..... LFWYKQGANDFPKYMLM RFKFGTGD.. NATAFK.....ERFHADLDVNSKSVPFTIQRVQLSDSARYYC AL
 #c U50990  ,TRAV6S1       EDDINPTRRMVDGVEGDTITLSCSYT GSVNN....... LQWYRQYLRSKPEFLIL ITKSGY.... VQKPVP.....PRMSAQVQT..DRMDLEISSAEVTDSALYYC AM

#c: rearranged cDNA.

Created: 21/10/1999
Last updated: Wednesday, 29-Jun-2011 17:06:08 CEST
Author: Géraldine Folch
Contact: Marie-Paule Lefranc

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