Protein display: Atlantic cod (Gadus morhua) IGIV

Only the *01 allele of each functional, ORF and in-frame pseudogene V-REGION is shown.

Dots indicate gaps according to the IMGT unique numbering. Blanks at the 5' and/or 3' end indicate partial sequences.

Letters in red correspond to amino acids which are polymorphic in the other alleles.
For C-REGIONs, letters in bold correspond to additional positions in the IMGT unique numbering.
For C-REGIONs, letters between parentheses correspond to amino acids resulting from the splicing.

_______________________________________________________________________________________________________________________________________________________

         IGIV                          FR1-IMGT           CDR1-IMGT       FR2-IMGT      CDR2-IMGT                 FR3-IMGT                  CDR3-IMGT
         genes                          (1-26)             (27-38)        (39-55)        (56-65)                  (66-104)                  (105-116)
____________________________ __________________________ ____________ _________________ __________ _______________________________________ _____________
                             1       10        20         30         40        50         60         70        80        90        100        110
                             .........|.........|...... ...|........ .|.........|..... ....|..... ....|.........|.........|.........|.... .....|......

     AF104898,IGIV1S1        QVTVTQTPV.VSFTPGSTVTLTCKTN PAVYRWSNVQQG IFWYQQKPGEAPKLIIS YIS....... TLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSFHYPNSVGVF
  #c AJ225249,IGIV1S2        QVTVTQTPV.VSVTPGSTVTLTCKTQ PAVYRWSDVQQG IFWYQQKPGEAPKFIIK YIS....... TLVSPTP.ARFSGSG..SSTDFSLTINDAQREDAAVYHC RSFHVLNSVHVV
  #c AJ225237,IGIV1S3        QVTVTQTQV.VSFTPGSTVTLTCKTN PAVYRHSSLGDC LSWYQQKPGEAPKRIIK YIN....... QHVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QVPTILTVSGCS
  #c AJ225238,IGIV1S4        QVTVTQTPV.VSFTPGSTVTLTCKTN PAVYRHPSLGDY LFWYQQKPGEAPKLIVK LVN....... QLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSYHSSGNV
  #c AJ225255,IGIV1S5        QVTVTQTPV.VSVNPGSTVTLTCKIN PAVYRHSSLGDY LFWYQQKPGEAPKLIVK LVN....... QLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSYHSSGNV
  #c AJ225251,IGIV1S6        QVTVTQTPV.VSFNQGTTVTLTCKTN PAVHRWSDGDEG MSWYQQKPGEAPKLFIR YAN....... KLVSPTP.ARFSGSG..RSTDFSLTINGAQSEDAAVYHC QSFHSPGSVRM
  #c AJ225257,IGIV1S7        QVTVTQTPV.VSFTPGSTVTLTCKTN PAVYRDSGGHDH MFWYQQKPGEEPKLIIK FAN....... QLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSYHSSGSVR
  #c AJ225259,IGIV1S8        QVTVTQTPV.VSVTPGTTVTLTCKTN PAVYRWSNGLEG IFWYQQKPGEEHKLIIK YVN....... QLVSPTP.ARVSGSG..SSTDFSLTITGIQREDAAVYHC QSFHFPYSVYV
  #c AJ225266,IGIV1S9        QVTVTQTPV.VSFNPGTTVTLTCKTN PAVHRYDDGDDG MFWYQQKPGEAPKLFIK YAN....... QLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSLHKLNSVWV
  #c AJ225239,IGIV1S10       QVTVTQTPV.VSFTPGSTVTLTCKTN PAVYSNSNGQY. LHWYQQKPGETPKLFIK IGN....... QLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSYHYLNSVHV
  #c AJ225248,IGIV1S11       QVTVTQTPV.VSFNQGTTVTLTCKTN PAVYSDGNGQY. LNWYQQKPGESPKLFIK FAN....... QLVSPTP.ARFSGSG..SSTDFSLTITAAQREDAAVYHC QSFHVLNSVYVR
  #c AJ225244,IGIV1S12       QVTVTQTPV.VSFTPGSTVTLTCKTN PAVYSDGYGQR. LHWYQQKPGEEPKLIIK YAN....... QLVSPTP.ARFTGSG..SSTDFSLTINGAQREDAAVYHC QSFHYPNSVSV
  #c AJ225246,IGIV1S13       QLTVTQTPV.VSVTPGSTVTLTCKTN TAVWSDIYGQR. LNWFQQKPGEGPKLIIK VVN....... QLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSEPGGYV
  #c AJ225250,IGIV1S14       QVTVTQTPV.VSFTPGSTVTLTCKTN PAVYSDGNGQR. LHWYQQKPGEAPRLIIK LVN....... QLVSPTP.ARFTGSG..SSTDFSLTISAAQREDAAVYHC QSFHYPNSVDVL
  #c AJ225252,IGIV1S15       QVTVTQTPV.VSVSPGTTVTLTCKTN PAVYSNSNGQH. LHWYQQKPGEAPKLIIK YIN....... QRVSPTP.ARFSGSG..SSTDFSLTINAAQREDAAVYHC HSFHFLNSVNL
  #c AJ225268,IGIV1S16       QVTVTQTPV.VSFTPGSTVTLTCKTN PAVYSDGNGQH. LHWYQQKPGEAPKLIIQ LVN....... QLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSLHYPNSVWVR
  #c AJ225243,IGIV1S17       QVTVTQTPV.VSFTPGSTVTLTCKIN PAVYRDSDGDN. MFWYQQKPGEAPKLFIK YTT....... QLVSPTP.ARFSGSG..SSTDFSLTINGPQREDAAVYHC QSYHYLNSVDV
  #c AJ225263,IGIV1S18       QVTVTQTPV.VSVSPESTVTLTCKIN PAVYRDGDGDN. MFWYQQKPGEAPKLFIK YTN....... QLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSYHSGGV
     AF104898,IGIV1S19       QVTVTQTPV.VSFTPGSTVTLTCKTN PAVQSGYE.... LHWYQQKPGGAPKLIVK RAD....... ERVSPTP.ARFSGSG..RRTDFSLTINGAQREDAAVYHC QSYHGGGVF...
     AF104899,IGIV1S20       QVTVTQTPV.MSVTPGSTVTLTCKTN PAVQNGFQ.... LNWYQQKPGGAPKVIIK LAD....... ELVSPTP.ARFSGSG..RRTDFSLTINGAQHEDAAVYHC QSLHIPNSDYVF
  #c AJ225253,IGIV1S21       QVTVIQTPV.VSVSPESTVTLTCKTN PAVYNNNY.... LHWYQQKPGEATKLIIK LVN....... NLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSYHSSGSV
  #c AJ225247,IGIV1S22       QVTVTQTPV.VSFTPGSTVTLTCKTN SAVHANTY.... LFWYQQKPGEEHKLIMK LVN....... QLVSPTP.ARFSGSG..SSTDFSLTITGAQREDAAVYHC QSYISSYV
  #c AJ225254,IGIV1S23       QVTVTQTPV.VSFTPGSTVTLTCKTN SAVHNNNY.... LHWYQQKPGEAPKLIIQ LAN....... QLVSPTP.ARFSGSG..SSTDFSLTITGARREDAAVYHC QSYINPYV
  #c AJ225258,IGIV1S24       QVTVTQTPV.VSFTPGSTVTLTCKTN TAVHGNNH.... IFWYQQKPGEEHKLIMK YVN....... QLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSYIDPYV
  #c AJ225260,IGIV1S25       QVTVTQTPV.VSFNPGTTVTLTCKTN PAVPNNNC.... LHWYQQKPGEAPKLIIK QTN....... TLVSPTP.ARFSGSG..SSTDFSLTINGAQREDAAVYHC QSFHYPNNVYV
  #c X76517  ,IGIV1S26       QVTVTQTPV.VSVTPGTTVTLTCKTN SAVYDGDE.... LHWYQQKPGEAPKLIMK LVN....... RLVSPTP.ARFSGSG..RRTDFSLTITGAQREDAAVYHC QSFHYPGSVRMY
  #c X68516  ,IGIV1S27                               TN TAVFNNDY.... IFWYQQKPGEEPKLIIK LVN....... QLVSPTP.ARFSGSG..SSTAFSLTITGAQREDAAVYHC QSLHWPGSVRM
  #c AJ225240,IGIV1S28       QVTVTQTPV.VSFTPGSTVTLTCKSN PAVYSNY..... LHWYQQKPGEAPKLIIR RTT....... TLVSPTP.ARFSGSG..SSTDFSLTINAAQREDAAVYHC QSLHYPNSVWVN
c(st)AJ293808,IGIV1S29       ALVLTQEKT.LSVNRGDNVKISCTET DSSSNYV..... LTWYQQKSGSPPKYLLT TTG....... SRASGIP.SRFTGSGTKNDKTEYLLINGIQDEDEATYYC ACVGCGAN...
c: cDNA sequence
#c: rearranged cDNA
(st): sterile transcript


Created: 21/03/2002
Last updated: Monday, 11-Jul-2011 12:56:55 CEST
Author: Nathalie Bosc
Contact: Marie-Paule Lefranc

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