Table of alleles: Rainbow trout (Oncorhynchus mykiss) TRBV

Functionality is shown between:
- parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
- brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

The IMGT allele table refers to the V-REGION polymorphism. It does not include polymorphisms in the other parts of the V-GENE. V-REGION alleles are only described for genes which have at least one Functional or ORF allele. The accession number of a reference sequence is given for each allele.
Nucleotide mutations and amino acid changes in CDR3-IMGT of rearranged sequences are not taken into account for the description of polymorphism.

Click on a gene name to get the alignment of the corresponding V-REGION alleles.
Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).

TRBV
subgroup
TRBV
gene name
Fct TRBV
allele name
Accession
number
Confirmed
by genetics
and/or data
Description of mutations
TRBV1 TRBV1S1 (F) TRBV1S1*01 U18123    
TRBV1S2 (F) TRBV1S2*01 AJ517910    
TRBV1S3 (F) TRBV1S3*01 AJ517915    
TRBV1S4 (F) TRBV1S4*01 AJ517917    
TRBV1S5 (F) TRBV1S5*01 AJ517919    
TRBV2 TRBV2S1 (F) TRBV2S1*01 U18124    
TRBV2S2 [P] TRBV2S2*01 AF329703    
TRBV2S3 [F] TRBV2S3*01 AF329705 +  
TRBV2S4 [F] TRBV2S4*01 AF329708    
TRBV2S5 [F] TRBV2S5*01 AF329713    
TRBV2S6 [F] TRBV2S6*01 AF329704    
TRBV2S7 [F] TRBV2S7*01 AF329718    
TRBV2S8 [F] TRBV2S8*01 AF329714    
TRBV2S9 [F] TRBV2S9*01 AF329710    
TRBV2S10 [F] TRBV2S10*01 AF329719    
TRBV2S11 [P] TRBV2S11*01 AF329723    
TRBV2S12 (F) TRBV2S12*01 AF329722    
TRBV2S13 (F) TRBV2S13*01 AF329700    
TRBV2S14 [F] TRBV2S14*01 AF329706    
TRBV2S15 (P) TRBV2S15*01 AF329716    
TRBV2S16 [F] TRBV2S16*01 AF329717 +  
TRBV2S17 [F] TRBV2S17*01 AF329702    
TRBV2S18 [F] TRBV2S18*01 AF329725    
TRBV2S19 [F] TRBV2S19*01 AF329707    
TRBV2S20 [F] TRBV2S20*01 AF329720    
TRBV2S21 [P] TRBV2S21*01 AF329724    
TRBV2S23 [F] TRBV2S23*01 AF329726    
TRBV2S24 [F] TRBV2S24*01 AF329711    
TRBV2S25 [ORF] TRBV2S25*01 AF329712    
TRBV2S26 [P] TRBV2S26*01 AF329721    
TRBV2S27 (F) TRBV2S27*01 AJ517925    
TRBV3 TRBV3S1 (F) TRBV3S1*01 U18125    
TRBV3S2 (F) TRBV3S2*01 AJ517930    
TRBV4 TRBV4S1 (F) TRBV4S1*01 AY135385    
TRBV5 TRBV5S1 (F) TRBV5S1*01 AY135386    
TRBV6 TRBV6S1 (F) TRBV6S1*01 AY135387 +  
TRBV7 TRBV7S1 (F) TRBV7S1*01 AY135389    
TRBV7S2 (F) TRBV7S2*01 AJ517966    
TRBV7S3 (F) TRBV7S3*01 AJ517967    
TRBV7S4 (F) TRBV7S4*01 AJ517968    
TRBV8 TRBV8S1 (F) TRBV8S1*01 AY135390    
TRBV8S2 (F) TRBV8S2*01 AJ517978    
TRBV8S3 (F) TRBV8S3*01 AJ517980    
TRBV9 TRBV9S1 (F) TRBV9S1*01 AY135391    
TRBV10 TRBV10S1 (F) TRBV10S1*01 AY135392    


Created: 06/11/2002
Author: Géraldine Folch

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