Table of alleles: Mouse ( Mus musculus) TRBJ

Print of this table: Bosc, N. and Lefranc, M.-P., Exp. Clin. Immunogenet., 17, 216-228 (2000). PMID:11096260

IMGT numbering and description of alleles for germline J-REGIONs start with the first nucleotide of the first codon. The accession number of a reference sequence is given for each allele.

Click on a gene name to get the alignment of the corresponding J-REGION alleles.
Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).

TRBJ
gene name
Fct
TRBJ
allele name
Strain
Accession
number
Confirmed by
genetics
and/or data
Description of mutations
TRBJ1-1
F
TRBJ1-1*01
B10.A
X01018
+
g32  ,R11  |
(F)
TRBJ1-1*02
BALB/c x C56BL/6 (F1)
M11456
 
g32>c,R11>T|
TRBJ1-2
F
TRBJ1-2*01
B10.A
X01018
+
 
TRBJ1-3
F
TRBJ1-3*01
B10.A
X01018
+
 
TRBJ1-4
F
TRBJ1-4*01
B10.A
X01018
+
t46
F
TRBJ1-4*02
BALB/c
AE000665
 
t46>c|
TRBJ1-5
F(1)
TRBJ1-5*01
BALB/c
AE000665
 
g10     |c14  ,P5  |t17  ,L6  |
F(1)
TRBJ1-5*02
B10.A
X01018
 
g10>del#|
F
TRBJ1-5*03
SJL/J
U77843
 
        |c14>a,P5>Q|t17>a,L6>H|
TRBJ1-6
ORF
TRBJ1-6*01
B10.A
X01018
+
 
TRBJ1-7
ORF
TRBJ1-7*01
B10.A
X01018
+
 
TRBJ2-1
F
TRBJ2-1*01
B10.A
K02802
+
 
TRBJ2-2
F
TRBJ2-2*01
B10.A
K02802
+
 
TRBJ2-3
F
TRBJ2-3*01
B10.A
K02802
+
 
TRBJ2-4
F
TRBJ2-4*01
B10.A
K02802
+
 
TRBJ2-5
F
TRBJ2-5*01
B10.A
K02802
+
 
TRBJ2-7
F
TRBJ2-7*01
B10.A
K02802
+
c30  |
(F)
TRBJ2-7*02
C57BL/6
M16122
+
c30>t|

IMGT note:
(1) Nucleotide G, at position 10 (according to the IMGT allele mutation numbering) of TRBJ5 in AE000665, is deleted in X01018. This DELETION leads to a frameshift. However it is not excluded that V-D-J rearrangements allow to reestablish the normal ORF (see alignment of alleles). In those cases, the STOP-CODON needs to be eliminated by the rearrangements. For these reasons the TRBJ1-5*02 is considered as functional.


Created: 25/10/1999
Last updated: Friday, 27-May-2016 21:03:38 CEST
Author: Nathalie Bosc

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For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

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