Table of alleles: Mouse (Mus musculus) TRGV

Functionality is shown between:
- parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
- brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

The IMGT allele table refers to the V-REGION polymorphism. It does not include polymorphisms in the other parts of the V-GENE. V-REGION alleles are only described for genes which have at least one Functional or ORF allele. The accession number of a reference sequence is given for each allele.
Nucleotide mutations and amino acid changes in CDR3-IMGT of rearranged sequences are not taken into account for the description of polymorphism.

Click on a gene name to get the alignment of the corresponding V-REGION alleles.
Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).

TRGV
subgroup
TRGV
gene name
Fct
TRGV
allele name
Strain
Accession number
Confirmed 
by genetics 
and/or data
Description of  mutations
TRGV1
TRGV1
F
V1*01
BALB/c
M12832
  g12  |g13  ,E5  |t25  ,L9  |g30  |a41  ,E14  |t74  ,V25  |c77  ,S26  |t85  ,Y29  |t91  ,c92  ,S31  |c101  ,t102  ,A34  |t120  |a142  ,K48  |t169  ,c170  ,S57  |a217  ,N73  |c251  ,T84  |g284  ,a285  |t300  |
F
V1*02
 
AF021335
                                                                                                                                                                                                         |t300>c|
(F)
V1*03
BALB/c
M26763
                                                                                                                                                                                           |g284>a,a285>g|t300>c|
(F)
V1*04
C57BL/10
X03802
+
                                 |a41>c,E14>A|                                                                                                                                                         |t300>c|
(F)
V1*05
AKR
U07554
  g12>a|g13>a,E5>K|t25>g,L9>V|g30>c|a41>c,E14>A|t74>c,V25>A|           |t85>g,Y29>D|t91>g,c92>g,S31>G|c101>a,t102>a,A34>E|t120>c|a142>c,K48>Q|t169>c,c170>a,S57>Q|a217>c,N73>H|                          |t300>c|
(F)
V1*06
DBA/2
M77017
                                                           |c77>a,S26>Y|                                                                                                                                 |t300>c|
(F)
V1*07
C57BL/10
Z22847
                                                                                                                                                                              |c251>g,T84>S|             |t300>c|
(F)
V1*08
L-I
Z48588
  g12>a|g13>a,E5>K|t25>g,L9>V|g30>c|           |t74>c,V25>A|           |t85>g,Y29>D|t91>g,c92>g,S31>G|c101>a,t102>a,A34>E|t120>c|a142>c,K48>Q|t169>c,c170>a,S57>Q|a217>c,N73>H|                          |t300>c|
TRGV2
F
V2*01
BALB/c
M12831
+
g40  ,E14  |a53  ,N18  |g57  |a77  ,t78  ,Y26  |g153  |g209  ,G70  |c217  ,H73  |a222  |g251  ,S84  |g268  ,E90  |
(F)
V2*02
 
M54996
  g40>c,E14>Q|           |g57>a|      t78>c      |
(F)
V2*03
BALB/c
X03985
+
                                               |g153>a|
(F)
V2*04
L-I
Z48589
             |a53>g,N18>S|     |a77>t,     ,Y26>F|      |g209>a,G70>E|            |a222>g|g251>c,S84>T|g268>a,E90>K|
[F]
V2*05
AKR
U07555
             |a53>g,N18>S|     |a77>t,     ,Y26>F|      |g209>a,G70>E|c217>a,H73>N|a222>g|g251>c,S84>T|g268>a,E90>K|
TRGV3
F
V3*01
 
AF037352
+
c41  ,a42  ,A14  |a43  ,c44  ,T15  |g86  ,C29  |a97  ,T33  |c101  ,A34  |a200  ,Q67  |c247  ,Q83  |c251  ,T84  |a268  ,K90  |
F
V3*02
BALB/c
M12833
+
c41>a,a42>g,A14>E|a43>c,c44>a,T15>Q|                                    |a200>g,Q67>R|                         |a268>g,K90>E|
[F]
V3*03
AKR
U07556
+
      a42>g      |                 |g86>a,C29>Y|a97>t,T33>S|c101>t,A34>V|            |c247>a,Q83>K|c251>g,T84>S|
TRGV2
TRGV4
F
V4*01
 
AF037352
+
t32  |c35  ,S12  |c40  ,P14  |g82  ,E28  |c102  |g132  |g145  ,G49  |a199  ,I67  |g231  |a241  ,N81  |t263  ,I88  |
(F)
V4*02
BALB/c
M30171
+
                                                                    |a199>g,I67>V|
(F)
V4*03
C57BL/10
M26765
  t32>g|c35>t,S12>F|c40>g,P14>A|g82>a,E28>K|c102>a|g132>a|g145>a,G49>S|            |g231>a|a241>g,N81>D|
(F)
V4*04
DBA/2
Z12299
                   |c40>g,P14>A| 
(F)
V4*05
L-I
Z48590
                   |c40>g,P14>A|                                                                       |t263>c,I88>T|
TRGV3
TRGV5
F
V5*01
 
AF037352
+
 
TRGV4
TRGV6
F
V6*01
C57BL/6
D29793
  c2  ,g3  ,T1  |a82  ,S28  |g146  ,R49  |a182  ,c183  |g284  ,R95  |
F
V6*02
 
AF037352
  c2>g,g3>c,T1>S|                                      |g284>c,R95>T|
(F)
V6*03
BALB/c
M13338
                                         |a182>c,c183>a|g284>c,R95>T|
(F)
V6*04
L-I
Z48592
                |a82>g,S28>G|g146>a,R49>H|             |g284>c,R95>T|
TRGV5
TRGV7
F
V7*01
C57BL/6
D29794
+
c218  ,a219  ,S73  |
F
V7*02
 
AF037352
+
c218>t,a219>g,S73>L|


Created: 27/10/1997
Last updated: Friday, 27-May-2016 21:03:39 CEST
Authors: Nathalie Pallarès, Dominique Scaviner

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