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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRAJ1 TRAJ1*01 P (1) 8 Boxer IMGT000004 [1] 734935..735026
TRAJ2 TRAJ2*01 F 8 Boxer IMGT000004 [1] 733761..733840
TRAJ3 TRAJ3*01 F 8 Boxer IMGT000004 [1] 733218..733303
TRAJ4 TRAJ4*01 F 8 Boxer IMGT000004 [1] 732243..732333
TRAJ5 TRAJ5*01 F 8 Boxer IMGT000004 [1] 729402..729489
TRAJ6 TRAJ6*01 F 8 Boxer IMGT000004 [1] 727996..728085
TRAJ7 TRAJ7*01 ORF (2) 8 Boxer IMGT000004 [1] 726262..726348
TRAJ8 TRAJ8*01 F 8 Boxer IMGT000004 [1] 724689..724776
TRAJ9 TRAJ9*01 F 8 Boxer IMGT000004 [1] 724106..724188
TRAJ10 TRAJ10*01 ORF (3) 8 Boxer IMGT000004 [1] 722193..722283
TRAJ11 TRAJ11*01 ORF (4) 8 Boxer IMGT000004 [1] 721186..721273
TRAJ12 TRAJ12*01 F 8 Boxer IMGT000004 [1] 720608..720695
TRAJ13 TRAJ13*01 F 8 Boxer IMGT000004 [1] 719767..719855
TRAJ14 TRAJ14*01 P (5) 8 Boxer IMGT000004 [1] 718566..718651
TRAJ15 TRAJ15*01 F 8 Boxer IMGT000004 [1] 717818..717905
TRAJ16 TRAJ16*01 F 8 Boxer IMGT000004 [1] 716669..716756
TRAJ17 TRAJ17*01 P (6) 8 Boxer IMGT000004 [1] 715280..715366
TRAJ18 TRAJ18*01 F 8 Boxer IMGT000004 [1] 714143..714236
TRAJ19 TRAJ19*01 ORF (7) 8 Boxer IMGT000004 [1] 713752..713835
TRAJ20 TRAJ20*01 F 8 Boxer IMGT000004 [1] 712772..712856
TRAJ21 TRAJ21*01 F 8 Boxer IMGT000004 [1] 712041..712123
TRAJ22 TRAJ22*01 ORF (8) 8 Boxer IMGT000004 [1] 710283..710368
TRAJ23 TRAJ23*01 F 8 Boxer IMGT000004 [1] 708653..708743
TRAJ24 TRAJ24*01 ORF (9) 8 Boxer IMGT000004 [1] 708218..708309
TRAJ25 TRAJ25*01 F 8 Boxer IMGT000004 [1] 707357..707444
TRAJ26 TRAJ26*01 F 8 Boxer IMGT000004 [1] 707019..707106
TRAJ27 TRAJ27*01 F 8 Boxer IMGT000004 [1] 704856..704942
TRAJ28 TRAJ28*01 F 8 Boxer IMGT000004 [1] 704213..704303
TRAJ29 TRAJ29*01 P (10) 8 Boxer IMGT000004 [1] 703168..703284
TRAJ30 TRAJ30*01 F 8 Boxer IMGT000004 [1] 702128..702214
TRAJ31 TRAJ31*01 F 8 Boxer IMGT000004 [1] 700112..700196
TRAJ32 TRAJ32*01 F 8 Boxer IMGT000004 [1] 698585..698676
TRAJ33 TRAJ33*01 F 8 Boxer IMGT000004 [1] 697830..697914
TRAJ34 TRAJ34*01 F 8 Boxer IMGT000004 [1] 697135..697220
TRAJ35 TRAJ35*01 P (11) 8 Boxer IMGT000004 [1] 696204..696297
TRAJ36 TRAJ36*01 P (12) 8 Boxer IMGT000004 [1] 694680..694784
TRAJ37 TRAJ37*01 F 8 Boxer IMGT000004 [1] 693908..693997
TRAJ38 TRAJ38*01 F 8 Boxer IMGT000004 [1] 692391..692480
TRAJ39 TRAJ39*01 F 8 Boxer IMGT000004 [1] 691745..691835
TRAJ40 TRAJ40*01 F 8 Boxer IMGT000004 [1] 689632..689720
TRAJ41 TRAJ41*01 F 8 Boxer IMGT000004 [1] 687591..687680
TRAJ42 TRAJ42*01 F 8 Boxer IMGT000004 [1] 687081..687174
TRAJ43 TRAJ43*01 F 8 Boxer IMGT000004 [1] 686253..686337
TRAJ44 TRAJ44*01 F 8 Boxer IMGT000004 [1] 685158..685248
TRAJ45 TRAJ45*01 F 8 Boxer IMGT000004 [1] 684046..684136
TRAJ46 TRAJ46*01 ORF (13) 8 Boxer IMGT000004 [1] 683533..683623
TRAJ47 TRAJ47*01 P (14) 8 Boxer IMGT000004 [1] 682945..683042
TRAJ48 TRAJ48*01 F 8 Boxer IMGT000004 [1] 680957..681047
TRAJ49 TRAJ49*01 F 8 Boxer IMGT000004 [1] 680151..680237
TRAJ50 TRAJ50*01 F 8 Boxer IMGT000004 [1] 679313..679400
TRAJ52 TRAJ52*01 ORF (15) 8 Boxer IMGT000004 [1] 676925..677021
TRAJ53 TRAJ53*01 ORF (16) 8 Boxer IMGT000004 [1] 673958..674044
TRAJ54 TRAJ54*01 ORF (17) 8 Boxer IMGT000004 [1] 673310..673402
TRAJ56 TRAJ56*01 F 8 Boxer IMGT000004 [1] 670536..670625
TRAJ57 TRAJ57*01 ORF (18) 8 Boxer IMGT000004 [1] 669889..669979
TRAJ58 TRAJ58*01 F 8 Boxer IMGT000004 [1] 668669..668759
TRAJ59 TRAJ59*01 ORF (19) 8 Boxer IMGT000004 [1] 667521..667608
TRAJ60 TRAJ60*01 F 8 Boxer IMGT000004 [1] 667278..667361
TRAJ61 TRAJ61*01 P (20) 8 Boxer IMGT000004 [1] 666264..666361
IMGT notes:
  1. (1) Frameshift in J-REGION
  2. (2) Noncanonical J-HEPTAMER: cagagcg instead of cacagtg
  3. (3) Noncanonical J-HEPTAMER: cactatg instead of cactgtg
  4. (4) Noncanonical J-HEPTAMER: tctggtg instead of tgtggtg
  5. (5) In frame STOP-CODON in J-REGION
  6. (6) Frameshift in J-REGION
  7. (7) Noncanonical J-HEPTAMER: tctagtc instead of tatagtg, unexpected J-SPACER length (10 nt instead of 12 nt)
  8. (8) Non conserved consensus sequence, FGXG is replaced by FGXR, unexpected V-SPACER length (9 nt instead of 12 nt)
  9. (9) Non conserved consensus sequence, FGXG is replaced by SGXG, noncanonical DONOR-SPLICE: nga instead of ngt
  10. (10) Frameshift in J-REGION, non conserved consensus sequence, FGXG is replaced by FCXG
  11. (11) Frameshift in J-REGION, non conserved consensus sequence, FGXG is replaced by FWXL
  12. (12) Frameshift in J-REGION
  13. (13) Non conserved consensus sequence,FGXG is replaced by FGXR, noncanonical J-HEPTAMER: aacggtg instead of catggtg
  14. (14) Frameshift in J-REGION
  15. (15) Noncanonical J-HEPTAMER: tgcggtg instead of tgtggtg
  16. (16) Noncanonical J-HEPTAMER: gatggtg instead of gattgtg
  17. (17) Noncanonical J-HEPTAMER: tgtagtg instead of tgcagtg
  18. (18) Non conserved consensus sequence, FGXG is replaced by FGXE
  19. (19) Non conserved consensus sequence, FGXG is replaced by FTXG
  20. (20) Frameshift in J-REGION
IMGT references:
  1. [1] Martin J. et al. Immunogenetics. 2017 Sep 19. doi: 10.1007/s00251-017-1028-0. PMID: 28924718
See also (IMGT Scientific chart):