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IMGT Repertoire (MH)

IMGT Repertoire comprises LIGM expertized data on immunoglobulins (IG), T cell receptors (TR), major histocompatibility (MH) and related proteins of the immune system (RPI).

1. Locus and genes

• Chromosomal localizations
• Locus representation
• IMGT/LocusView complete locus
• IMGT/GeneSearch list of genes
• IMGT/GeneView query
• Gene exon/intron organization
• Coding region structure
• Lists of MHC genes and loci
• MHC-I gene examples in vertebrates
• Representative MHC genes and chains
• Correspondence between nomenclatures

2. Proteins and alleles

• IMGT MHC entries from gene to protein
• Protein displays G-DOMAIN
• Protein displays C-LIKE-DOMAIN

3. 2D and 3D structures

• Colliers de Perles G-DOMAIN
• Colliers de Perles C-LIKE-DOMAIN
• 3D representation
• Strand and loop lengths

4. Polymorphism

• Serological families and alleles: Human MHC: HLA-A
• Haplotypes HLA-DRB
• Polymorphisms in the introns: MHC-I-Alpha HLA-A
• Mouse H2 haplotypes and polymorphisms
• Consomic vs. congenic strains (mouse and rat)

5. Taxonomy

• IMGT Taxonomy tree
• List of the Latin and English names of the species in IMGT/LIGM-DB
• List of the mouse strains in IMGT Repertoire
• Non-vertebrates in IMGT/LIGM-DB

Created: 02/08/2002
Last updated: Wednesday, 04-Jan-2012 22:01:57 CET
Editors: Chantal Ginestoux, Géraldine Folch, Elodie Gemrot
Contact: Marie-Paule Lefranc

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Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Research, 27, 209-212 (1999) Cover of NAR; Ruiz, M. et al., Nucleic Acids Research, 28, 219-221 (2000); Lefranc, M.-P., Nucleic Acids Research, 29, 207-209 (2001); Lefranc, M.-P., Nucleic Acids Res., 31, 307-310 (2003); Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5, 45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33, D593-D597 (2005) Full text; Lefranc, M.-P. et al., Nucleic Acids Research 2009 37: D1006-D1012; doi:10.1093/nar/gkn838 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

     

IMGT founder and director: Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr
Bioinformatics manager: Véronique Giudicelli Veronique.Giudicelli@igh.cnrs.fr
Computer manager: Patrice Duroux Patrice.Duroux@igh.cnrs.fr
Webmaster: Chantal Ginestoux Chantal.Ginestoux@igh.cnrs.fr

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