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Other CD1 entries

IMGT RPI entry from gene to protein for Homo sapiens CD1A

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

CD1A Gene exon/intron organization

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Number of alleles: 3

IMGT reference alleles

Allele name Gene functionality reference sequences
Clone names Accession numbers Molecule type
CD1A*01 F lambda-R4B3 M22080 gDNA (EX1)
M22163 gDNA (EX2)
M22164 gDNA (EX3)
M22165 gDNA (EX4)
M22166 gDNA (EX5)
M22167 gDNA (EX6)
CD1A*02 F M28825 cDNA
CD1A*03 F X04450 cDNA (1)

IMGT reference sequences (in FASTA format) for the allele(s): CD1A*01 to CD1A*03

Other sequences from the literature

Allele name Gene functionality reference sequences
Clone names Accession numbers Molecule type
CD1A*01 F RP11-101J8 AL121986 gDNA
AF142665 cDNA (2)

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
CD1A*01 M22080 20 aa
M22163 to M22167 307 aa
AL121986 327 aa
AF142665 (2) 91 aa
CD1A*02 NM_00763 NP_001754 327 aa
M28825 Sw: P06126 327 aa
CD1A*03 X04450 (1) Sw: P06126 229 aa (1)
IMGT notes:
  1. (1) partial cds, from EX3
  2. (2) partial cds, only EX2

Genomic sequence

Position: 1084...4105 (from ATG to stop codon included).

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

CD1A*01: AL121986(g)

Nucleotide sequence

1        atgctgtttt tgctacttcc attgttagct gttctcccag gtgatggcaa tgcagacggg

61       ctcaaggagc ctctctcctt ccatgtcacc tggatcgcat ccttttacaa ccattcctgg

121      aaacaaaatc tggtctcagg ttggctgagt gatttgcaga ctcatacctg ggacagcaat

181      tccagcacca tcgttttcct gtgcccctgg tccaggggaa acttcagcaa tgaggagtgg

241      aaggaactgg aaacattatt ccgtatacgc accattcggt catttgaggg aattcgtaga

301      tacgcccatg aattgcagtt tgaatatcct tttgagatac aggtgacagg aggctgtgag

361      ctgcactctg gaaaggtctc aggaagcttc ttgcagttag cttatcaagg atcagacttt

421      gtgagcttcc agaacaattc atggttgcca tatccagtgg ctgggaatat ggccaagcat

481      ttctgcaaag tgctcaatca gaatcagcat gaaaatgaca taacacacaa tcttctcagt

541      gacacctgcc cacgtttcat cttgggtctt cttgatgcag gaaaggcaca tctccagcgg

601      caagtgaagc ccgaggcctg gctgtcccat ggccccagtc ctggccctgg ccatctgcag

661      cttgtgtgcc atgtctcagg attctaccca aagcccgtgt gggtgatgtg gatgcggggt

721      gagcaggagc agcagggcac tcagcgaggg gacatcttgc ccagtgctga tgggacatgg

781      tatctccgcg caaccctgga ggtggccgct ggggaggcag ctgacctgtc ctgtcgggtg

841      aagcacagca gtctagaggg ccaggacatc gtcctctact gggagcatca cagttccgtg

901      ggcttcatca tcttggcggt gatagtgcct ttacttcttc tgataggtct tgcgctttgg

961      ttcaggaaac gctgtttctg ttaa
Nucleotide sequence in FASTA format (without gaps) CD1A*01

Amino acid sequence

1        MLFLLLPLLA VLPGDGNADG LKEPLSFHVT WIASFYNHSW KQNLVSGWLS DLQTHTWDSN

61       SSTIVFLCPW SRGNFSNEEW KELETLFRIR TIRSFEGIRR YAHELQFEYP FEIQVTGGCE

121      LHSGKVSGSF LQLAYQGSDF VSFQNNSWLP YPVAGNMAKH FCKVLNQNQH ENDITHNLLS

181      DTCPRFILGL LDAGKAHLQR QVKPEAWLSH GPSPGPGHLQ LVCHVSGFYP KPVWVMWMRG

241      EQEQQGTQRG DILPSADGTW YLRATLEVAA GEAADLSCRV KHSSLEGQDI VLYWEHHSSV

301      GFIILAVIVP LLLLIGLALW FRKRCFC*
Amino acid sequence in FASTA format (without gap) CD1A*01

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