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Other DSCAM entries

IMGT RPI entry from gene to protein for Homo sapiens DSCAM

Citing IMGT RPI entry for DSCAM

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

DSCAM Gene exon/intron organization

Legend:

Number of alleles: 2

IMGT reference alleles

Allele names Gene functionality IMGT reference sequences
Clone names Exons Accession numbers Molecule type
DSCAM*01 F EX1-3 AL163283 gDNA
EX4-15 AL163282
EX16-33 AL163281
DSCAM*02 F EX1-33 AB209136 cDNA (1)

IMGT reference sequences (in FASTA format) for the allele(s): DSCAM*01 to DSCAM*02

Other sequences from the literature

Allele names Gene functionality IMGT reference sequences
Clone names Exons Accession numbers Molecule type
DSCAM*01 F EX1-33 AF217525 cDNA
EX2-33 AF023449 partial cDNA (2) splicing B
EX1-28 AF023450 cDNA (3) splicing C
EX5-33 AF289030 partial cDNA splicing D
EX1-33 NM_001389 partial cDNA
EX1-28 NM_206887 cDNA splicing C

Corresponding protein database accession numbers

Allele names Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
DSCAM*01 AL163283 O60469 2012 aa 1
AF023449 1896 aa 2
AF023450 O60469 1571 aa 3
AF289030 Q8WY19 1746 aa 4
NM_001380 NP_001380 2012 aa 1
NM_206887 NP_996770 1571 aa 2
DSCAM*02 AB209136 Q59GH3 2012 aa 1
IMGT notes:
  1. (1) 23c>g (8D>E) in [D3] domain of EX5.
  2. (2) 1896 aa. EX1 missing. In EX32 one nucleotide 'c' at position 294 is missing and this lead to the frame shift and pretermination of the protein.
  3. (3) 1571 aa. Multiple alternative splicing in EX25-27 leading to pre-termination of protein.
  4. (4) 1746 aa. Alternative splicing 54 bp from 5' site in EX33.

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

DSCAM*01: AL163283(g) AL163282(g) AL163281(g)

Nucleotide sequence

1        atgtggatac tggctctctc cttgttccag agcttcgcga atgttttcag tgaagaccta

61       cactccagcc tctactttgt caatgcatct ctgcaagagg tagtgtttgc cagcaccacg

121      gggactctgg tgccctgccc cgcagcaggc atccctcctg tgactctcag atggtaccta

181      gccacgggcg aggagatcta cgatgtcccc gggatccgcc acgtccaccc caacggcact

241      ctccaaattt tccccttccc tccttcaagc ttcagtacct taatccatga taatacttat

301      tattgcacag ctgaaaatcc ttcagggaaa attagaagtc aggatgtcca catcaaggct

361      gttttacggg agccctatac agtccgtgtg gaggaccaga aaaccatgag aggcaatgtt

421      gcggtcttca agtgcattat cccctcctcg gtggaggcgt acatcactgt cgtctcatgg

481      gagaaagaca ctgtttcact tgtctcagga tctagatttc tcatcacatc cacgggagcc

541      ttgtatatta aagatgtaca gaatgaagat ggattgtata actaccgctg catcacgcgg

601      catcgataca ccggagagac gaggcagagc aacagcgcca gactttttgt atcagaccca

661      gcgaactcag ccccatccat actggatggg tttgaccatc gcaaagccat ggctgggcag

721      cgtgtggagc tgccttgcaa agcgctcggg caccctgagc cagattaccg ctggctgaag

781      gacaacatgc ccctggaact ttcagggagg ttccagaaga ccgtgacggg gctgctcatt

841      gagaacattc gcccctcgga ctcaggcagc tatgtttgtg aagtgtccaa cagatacgga

901      actgctaagg tgataggccg cctgtacgtg aaacagccac tgaaagccac catcagtccc

961      aggaaggtta aaagcagcgt gggtagccaa gtttccttgt cctgcagcgt gacaggaact

1021     gaggaccagg aactctcctg gtaccgcaat ggtgaaatcc tcaaccctgg aaaaaatgtg

1081     aggatcacag ggatcaacca cgaaaacctt ataatggatc acatggtcaa aagtgacggg

1141     ggcgcatacc agtgctttgt gcgcaaggac aagctgtccg ctcaagacta tgtgcaggtg

1201     gtccttgaag atggaactcc caaaattatt tctgccttta gtgaaaaggt ggtgagtcca

1261     gcagagccgg tttcccttat gtgcaacgtg aagggaacac ctttgcccac gatcacgtgg

1321     accctggacg atgacccgat tctcaagggt ggcagtcacc gcatcagcca gatgatcacg

1381     tcggagggga acgtggtcag ctacctgaac atctccagct cccaggtccg ggacggggga

1441     gtctaccgct gcactgccaa caactcggcg ggagtcgtcc tgtaccaggc tcgaataaac

1501     gtaagagggc ctgcaagcat tcgaccaatg aaaaacatca cagcaatagc aggacgggac

1561     acatacattc actgtcgtgt gattggctat ccgtattact ccattaaatg gtacaagaac

1621     tctaacctgc ttcctttcaa ccaccgccaa gtggcatttg agaacaatgg aactcttaaa

1681     ctttcagatg tgcaaaagga agtggacgag ggggagtaca cgtgcaacgt gttggttcaa

1741     ccacaactct ccaccagcca gagcgtccac gtgaccgtga aagttccgcc tttcatacaa

1801     ccctttgagt ttccaagatt ctccattggg cagcgggtct tcatcccctg tgttgtggtc

1861     tcaggggact tacccatcac gatcacctgg cagaaggatg gccggccaat ccctgggagc

1921     cttggggtga ccattgacaa tattgacttc acgagctcct tgaggatttc caatctctcg

1981     ctcatgcaca atgggaatta cacctgcata gcccggaatg aggccgccgc tgtggagcac

2041     caaagccagt tgattgtcag agttcctccc aagtttgtgg ttcagccacg ggaccaggac

2101     gggatttatg gcaaagcagt catcctcaat tgttctgctg agggttaccc tgtacctacc

2161     atcgtgtgga aattctctaa aggtgctggg gttccccagt tccagccaat tgccctaaat

2221     ggccgaatcc aagttctcag caatgggtcg ttgctgatca agcatgtcgt ggaggaagac

2281     agtggctact acctctgcaa ggtcagcaac gatgtgggcg cagacgtcag caagtccatg

2341     tacctcacgg ttaaaattcc tgcgatgata acatcctatc caaatactac cctggccacg

2401     caggggcaga aaaaggagat gagctgcacg gcgcatggtg agaagcccat tatagtccgc

2461     tgggagaagg aggaccgaat cattaaccct gagatggccc gttatcttgt gtccaccaag

2521     gaggtgggag aagaggtgat ttctactctg cagattttgc caactgtgag agaagattct

2581     ggtttctttt cctgccatgc tattaattct tatggggagg accgtggaat aattcagctc

2641     acagtgcaag agcccccaga ccctcccgaa attgagatca aagatgtcaa agcacgcaca

2701     attacgctca ggtggaccat ggggtttgat ggaaacagtc ccatcacagg ctacgatatt

2761     gaatgcaaaa ataaatcaga ctcctgggat tctgctcaga gaaccaaaga tgtttcccct

2821     cagctgaact cggccaccat cattgatatc cacccttcct ccacctacag catccgcatg

2881     tacgccaaga accggattgg caagagcgag cccagcaacg agctcaccat cacggcggac

2941     gaggcagctc ctgatggtcc acctcaggaa gttcacctgg agcctatatc atctcagagc

3001     atcagggtca catggaaggc tcccaagaaa catttgcaaa atgggattat ccgtggctac

3061     caaataggtt accgagagta cagcactggg ggtaacttcc aattcaacat tatcagtgtc

3121     gacaccagcg gggacagtga ggtttacacc ctggacaacc tgaataagtt cactcagtac

3181     ggcctggtgg tgcaggcctg taaccgggcc ggcacggggc cttcttctca ggaaatcatc

3241     accaccactc tcgaggatgt gcccagttac ccccccgaaa atgtccaagc catagcaaca

3301     tcaccagaaa gcatatcaat atcctggtcc acactttcca aggaagcctt gaatggaatt

3361     ctccaggggt tcagagtcat ttactgggcc aacctcatgg acggagagct gggtgagatt

3421     aaaaacatca ccaccacaca gccttcactg gagctggacg ggctggaaaa gtacaccaac

3481     tacagcatcc aggtgctggc cttcacccgc gcaggagacg gggtcaggag tgagcagatc

3541     ttcacccgga ccaaagagga tgttccaggt cctcccgcgg gtgtgaaggc agcggcggcc

3601     tcagcctcca tggtctttgt gtcctggctt ccccctctca agctgaacgg catcatccga

3661     aagtacactg tattctgctc ccacccctat cccacagtga tcagcgagtt tgaggcctct

3721     cccgactcgt tttcctacag aattcccaac ctgagtagga atcgtcagta cagcgtctgg

3781     gtggtggctg ttacttcagc cggaagaggc aacagcagtg aaatcatcac agtcgagcca

3841     ctagcaaaag ctcctgcacg aatcctgacc ttcagtggga cagtgactac tccatggatg

3901     aaagacattg tcttgccttg taaggctgtt ggggaccctt ctcctgcagt caaatggatg

3961     aaagacagta acgggacacc cagtctagta acgattgatg ggcggaggag catctttagc

4021     aacggaagct tcattattcg cacggtgaaa gcagaagact ccggctatta cagctgcatt

4081     gccaataaca actggggatc tgatgaaatt attttaaact tacaagtaca agttccacca

4141     gatcagcctc ggcttacagt ctccaagacc acgtcttcct ccatcaccct ttcttggctc

4201     cctggagaca acgggggcag ctctatcaga ggatacatac tgcagtactc cgaggacaat

4261     agtgagcagt gggggagttt tccaatcagc cccagcgaac gttcctatcg cttggaaaat

4321     ctcaaatgtg ggacttggta taagttcaca ctgacagccc aaaatggagt gggcccaggg

4381     cgcataagtg aaatcataga agcaaagacc ttaggaaaag agccccagtt ctcaaaggag

4441     caggagctgt ttgccagcat caacaccaca cgcgtgaggc tgaacctcat tggctggaat

4501     gatggcggct gccccatcac ctccttcaca ctagagtaca ggccctttgg gaccacagtt

4561     tggaccacag ctcagaggac ctctctctcc aagtcctaca tcctgtatga cctgcaggaa

4621     gccacctggt atgagctgca gatgcgggtg tgcaacagtg cgggctgcgc ggagaagcag

4681     gccaacttcg ctacgctgaa ctacgatggc agtacaattc ctccactcat taagtcagtt

4741     gtccaaaacg aagaagggct gacgaccaac gaggggctca agatgctggt gaccatctcc

4801     tgtatcctgg tgggggtctt gctgctgttt gtgctcctgc tggttgtgcg gaggaggcgg

4861     cgggagcaga ggctaaagag gctgcgagat gcaaagagtt tagctgaaat gctcatgagt

4921     aagaataccc ggacttcaga tacgttaagc aagcaacagc agaccctgcg aatgcacatc

4981     gacataccca gggctcagct tttgattgaa gagagagaca cgatggagac cattgatgat

5041     cgctccacgg ttctgttgac ggatgctgac tttggagagg cagctaagca gaagtccctg

5101     acggtcactc acacggtcca ttaccaatcg gtgtctcagg ccactgggcc cttagtggat

5161     gtttcagacg ctcggccggg aacgaatccc accaccagga ggaatgccaa ggctgggccc

5221     acagcgagaa accgctatgc cagccagtgg accctcaacc gaccccaccc caccatctca

5281     gcacacaccc tcaccacaga ctggaggctg ccaacaccca gggctgcagg atcagtagac

5341     aaagagagcg acagttacag cgtcagcccc tcgcaagaca cagatcgagc aagaagcagc

5401     atggtctcca cagaaagtgc ctcctccact tacgaagaac tggccagggc ctacgaacac

5461     gccaagatgg aagagcaact gaggcacgcc aagttcacca tcacggagtg cttcatatca

5521     gacacgtcat cggagcagtt gacggcaggg acaaatgagt acacggacag tctgacctcc

5581     agcacccctt ccgaatcggg aatctgcagg ttcactgcat ctccccccaa acctcaggat

5641     ggaggaagag taatgaatat ggcagttcca aaggcacatc ggccaggtga cctcatacat

5701     ttgcctccat accttagaat ggactttttg ttaaaccgag gtggtccagg caccagcagg

5761     gacctgagct taggacaagc atgcttggaa cctcagaaaa gccggaccct gaagcgcccc

5821     acggtcctgg agcccatccc gatggaagcc gcctcctccg cctcctccac gagagaagga

5881     cagtcgtggc agccgggggc cgtggccaca ttacctcagc gggagggagc agagctggga

5941     caggcagcta aaatgagcag ctcccaagaa tcactgctcg actcccgggg ccatttgaaa

6001     ggaaacaatc cttacgcaaa atcttacacc ctggtataa
Nucleotide sequence in FASTA format (without gaps) DSCAM*01

Amino acid sequence

1        MWILALSLFQ SFANVFSEDL HSSLYFVNAS LQEVVFASTT GTLVPCPAAG IPPVTLRWYL

61       ATGEEIYDVP GIRHVHPNGT LQIFPFPPSS FSTLIHDNTY YCTAENPSGK IRSQDVHIKA

121      VLREPYTVRV EDQKTMRGNV AVFKCIIPSS VEAYITVVSW EKDTVSLVSG SRFLITSTGA

181      LYIKDVQNED GLYNYRCITR HRYTGETRQS NSARLFVSDP ANSAPSILDG FDHRKAMAGQ

241      RVELPCKALG HPEPDYRWLK DNMPLELSGR FQKTVTGLLI ENIRPSDSGS YVCEVSNRYG

301      TAKVIGRLYV KQPLKATISP RKVKSSVGSQ VSLSCSVTGT EDQELSWYRN GEILNPGKNV

361      RITGINHENL IMDHMVKSDG GAYQCFVRKD KLSAQDYVQV VLEDGTPKII SAFSEKVVSP

421      AEPVSLMCNV KGTPLPTITW TLDDDPILKG GSHRISQMIT SEGNVVSYLN ISSSQVRDGG

481      VYRCTANNSA GVVLYQARIN VRGPASIRPM KNITAIAGRD TYIHCRVIGY PYYSIKWYKN

541      SNLLPFNHRQ VAFENNGTLK LSDVQKEVDE GEYTCNVLVQ PQLSTSQSVH VTVKVPPFIQ

601      PFEFPRFSIG QRVFIPCVVV SGDLPITITW QKDGRPIPGS LGVTIDNIDF TSSLRISNLS

661      LMHNGNYTCI ARNEAAAVEH QSQLIVRVPP KFVVQPRDQD GIYGKAVILN CSAEGYPVPT

721      IVWKFSKGAG VPQFQPIALN GRIQVLSNGS LLIKHVVEED SGYYLCKVSN DVGADVSKSM

781      YLTVKIPAMI TSYPNTTLAT QGQKKEMSCT AHGEKPIIVR WEKEDRIINP EMARYLVSTK

841      EVGEEVISTL QILPTVREDS GFFSCHAINS YGEDRGIIQL TVQEPPDPPE IEIKDVKART

901      ITLRWTMGFD GNSPITGYDI ECKNKSDSWD SAQRTKDVSP QLNSATIIDI HPSSTYSIRM

961      YAKNRIGKSE PSNELTITAD EAAPDGPPQE VHLEPISSQS IRVTWKAPKK HLQNGIIRGY

1021     QIGYREYSTG GNFQFNIISV DTSGDSEVYT LDNLNKFTQY GLVVQACNRA GTGPSSQEII

1081     TTTLEDVPSY PPENVQAIAT SPESISISWS TLSKEALNGI LQGFRVIYWA NLMDGELGEI

1141     KNITTTQPSL ELDGLEKYTN YSIQVLAFTR AGDGVRSEQI FTRTKEDVPG PPAGVKAAAA

1201     SASMVFVSWL PPLKLNGIIR KYTVFCSHPY PTVISEFEAS PDSFSYRIPN LSRNRQYSVW

1261     VVAVTSAGRG NSSEIITVEP LAKAPARILT FSGTVTTPWM KDIVLPCKAV GDPSPAVKWM

1321     KDSNGTPSLV TIDGRRSIFS NGSFIIRTVK AEDSGYYSCI ANNNWGSDEI ILNLQVQVPP

1381     DQPRLTVSKT TSSSITLSWL PGDNGGSSIR GYILQYSEDN SEQWGSFPIS PSERSYRLEN

1441     LKCGTWYKFT LTAQNGVGPG RISEIIEAKT LGKEPQFSKE QELFASINTT RVRLNLIGWN

1501     DGGCPITSFT LEYRPFGTTV WTTAQRTSLS KSYILYDLQE ATWYELQMRV CNSAGCAEKQ

1561     ANFATLNYDG STIPPLIKSV VQNEEGLTTN EGLKMLVTIS CILVGVLLLF VLLLVVRRRR

1621     REQRLKRLRD AKSLAEMLMS KNTRTSDTLS KQQQTLRMHI DIPRAQLLIE ERDTMETIDD

1681     RSTVLLTDAD FGEAAKQKSL TVTHTVHYQS VSQATGPLVD VSDARPGTNP TTRRNAKAGP

1741     TARNRYASQW TLNRPHPTIS AHTLTTDWRL PTPRAAGSVD KESDSYSVSP SQDTDRARSS

1801     MVSTESASST YEELARAYEH AKMEEQLRHA KFTITECFIS DTSSEQLTAG TNEYTDSLTS

1861     STPSESGICR FTASPPKPQD GGRVMNMAVP KAHRPGDLIH LPPYLRMDFL LNRGGPGTSR

1921     DLSLGQACLE PQKSRTLKRP TVLEPIPMEA ASSASSTREG QSWQPGAVAT LPQREGAELG

1981     QAAKMSSSQE SLLDSRGHLK GNNPYAKSYT LV*
Amino acid sequence in FASTA format (without gap) DSCAM*01

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