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Other RAET1 entries

IMGT RPI entry from gene to protein for Homo sapiens RAET1E

IMGT gene name and definition

Chromosomal localization

Locus representation

Homo sapiens RAET1E locus 6q25.1

RAET1E Locus representation

The human RAET1 locus [1] located at 6q25.1 spans 200 kilobases from 150,230 to 150,430 kb (Ensembl, 09/06/2004).

Clones (in blue) are in forward (FWD) orientation on the chromosome. They overlap by about 100 base pairs of complete similarity. An additional 100 base pairs are dissimilar probably for cloning reasons.

Gene exon/intron organization

RAET1E Gene exon/intron organization

Legend:

Number of alleles: 4

IMGT reference alleles

Allele name Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
RAET1E*01 F RP11-350J20 AL355312 [1] gDNA
RAET1E*02 F AY252119 cDNA
RAET1E*03 F AF359243 cDNA
RAET1E*04 F AY054974 cDNA
splicing C (1)

IMGT reference sequences (in FASTA format) for the allele(s): RAET1E*01 to RAET1E*04

Other sequences from the literature

Allele name Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
RAET1E*01 F AY069961 cDNA
AY359075 cDNA
splicing B (2)

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
RAET1E*01 AY069961 Sw: Q8TD07 263 aa
AY359075 212 aa splicing B (2)
NM_139165 NP_631904 263 aa
RAET1E*02 AY252119 Sw: Q8TD07 263 aa
RAET1E*03 AF359243 222 aa (3)
RAET1E*04 AY054974 227 aa splicing C (1)
IMGT notes:
  1. (1) Alternative splicing between 3' part of EX1 and 5' part of EX2 (codon_start1).
  2. (2) Alternative splicing, EX4 is different.
  3. (3) At the C terminal end, 41 amino acids are missing (corresponding to 126 nucleotides including the STOP-CODON).
IMGT references:
  1. [1] Radosavljevic, M. et al., Genomics, 79, 114-123 (2002). PMID: 11827464

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

RAET1E*01: AL355312(g) AY069961(c)

Nucleotide sequence

1        atgcgaagaa tatccctgac ttctagccct gtgcgccttc ttttgtttct gctgttgcta

61       ctaatagcct tggagatcat ggttggtggt cactctcttt gcttcaactt cactataaaa

121      tcattgtcca gacctggaca gccctggtgt gaagcgcagg tcttcttgaa taaaaatctt

181      ttccttcagt acaacagtga caacaacatg gtcaaacctc tgggcctcct ggggaagaag

241      gtatatgcca ccagcacttg gggagaattg acccaaacgc tgggagaagt ggggcgagac

301      ctcaggatgc tcctttgtga catcaaaccc cagataaaga ccagtgatcc ttccactctg

361      caagtcgaga tgttttgtca acgtgaagca gaacggtgca ctggtgcatc ctggcagttc

421      gccaccaatg gagagaaatc cctcctcttt gacgcaatga acatgacctg gacagtaatt

481      aatcatgaag ccagtaagat caaggagaca tggaagaaag acagagggct ggaaaagtat

541      ttcaggaagc tctcaaaggg agactgcgat cactggctca gggaattctt agggcactgg

601      gaggcaatgc cagaaccgac agtgtcacca gtaaatgctt cagatatcca ctggtcttct

661      tctagtctac cagatagatg gatcatcctg ggggcattca tcctgttagt tttaatggga

721      attgttctca tctgtgtctg gtggcaaaat ggtgagtggc aggctggtct ctggcccttg

781      aggacgtctt ag
Nucleotide sequence in FASTA format (without gaps) RAET1E*01

Amino acid sequence

1        MRRISLTSSP VRLLLFLLLL LIALEIMVGG HSLCFNFTIK SLSRPGQPWC EAQVFLNKNL

61       FLQYNSDNNM VKPLGLLGKK VYATSTWGEL TQTLGEVGRD LRMLLCDIKP QIKTSDPSTL

121      QVEMFCQREA ERCTGASWQF ATNGEKSLLF DAMNMTWTVI NHEASKIKET WKKDRGLEKY

181      FRKLSKGDCD HWLREFLGHW EAMPEPTVSP VNASDIHWSS SSLPDRWIIL GAFILLVLMG

241      IVLICVWWQN GEWQAGLWPL RTS*
Amino acid sequence in FASTA format (without gap) RAET1E*01

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