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Other RAET1 entries

IMGT RPI entry from gene to protein for Homo sapiens RAET1G

IMGT gene name and definition

Chromosomal localization

Locus representation

Homo sapiens RAET1G locus 6q25.1

RAET1G Locus representation

The human RAET1 locus [1] located at 6q25.1 spans 200 kilobases from 150,230 to 150,430 kb (Ensembl, 09/06/2004).

Clones (in blue) are in forward (FWD) orientation on the chromosome. They overlap by about 100 base pairs of complete similarity. An additional 100 base pairs are dissimilar probably for cloning reasons.

Gene exon/intron organization

RAET1G Gene exon/intron organization

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Number of alleles: 1

IMGT reference alleles

Allele name Gene functionality IMGT reference sequences
Clone names Exons Accession numbers Molecule type
RAET1G*01 F EX1-5 AY172579 cDNA

IMGT reference sequences (in FASTA format) for the allele(s): RAET1G*01

Other sequences from the literature

Allele name Gene functionality IMGT reference sequences
Clone names Exons Accession numbers Molecule type
RAET1G*01 Unknown EX1-3 AY172580 cDNA splicing B

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
RAET1G*01 AY172579 Q6H3X3 334 aa

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

RAET1G*01: AY172579(c)

Nucleotide sequence

1        atggcagcgg ccgccagccc cgcgttcctt ctacgcctcc cgcttctgct cctgctgtcc

61       agctggtgca ggaccgggct ggccgaccct cactctcttt gctatgacat caccgtcatc

121      cctaagttca gacctggacc acggtggtgt gcggttcaag gccaggtgga tgaaaagact

181      tttcttcact atgactgtgg cagcaagaca gtcacacccg tcagtcccct ggggaagaaa

241      ctaaatgtca caacggcctg gaaagcacag aacccagtac tgagagaggt ggtggacata

301      cttacagagc aactgcttga cattcagctg gagaattaca tacccaagga acccctcacc

361      ctgcaggcca ggatgtcttg tgagcagaaa gccgaaggac acggcagtgg atcttggcag

421      ctcagtttcg atggacagat cttcctcctc tttgactcag aaaacagaat gtggacaacg

481      gttcatcctg gagccagaaa gatgaaagaa aagtgggaga atgacaagga tatgaccatg

541      tccttccatt acatctcaat gggagactgc acaggatggc ttgaggactt cttgatgggc

601      atggacagca ccctggagcc aagtgcagga gcaccaccca ccatgtcctc aggcacagcc

661      caacccaggg ccacggccac caccctcatc ctttgctgcc tcctcatcat gtgtctcctc

721      atatgctcca ggcacagtct gacccaaagc catggccacc accctcagtc cctgcagcct

781      cctcctcatc ctcccctgct tcatcctacc tggctgctga gaagagtcct ttggagtgac

841      agctaccaaa tagcgaagcg ccccttgtct ggtggacacg tgactcgcgt gactttacct

901      atcattggag acgactcaca ctccttaccc tgccctcttg ccttgtatac aataaataac

961      ggcgcagcca ggtattcgga gccactacag gtctccatat cttga
Nucleotide sequence in FASTA format (without gaps) RAET1G*01

Amino acid sequence

1        MAAAASPAFL LRLPLLLLLS SWCRTGLADP HSLCYDITVI PKFRPGPRWC AVQGQVDEKT

61       FLHYDCGSKT VTPVSPLGKK LNVTTAWKAQ NPVLREVVDI LTEQLLDIQL ENYIPKEPLT

121      LQARMSCEQK AEGHGSGSWQ LSFDGQIFLL FDSENRMWTT VHPGARKMKE KWENDKDMTM

181      SFHYISMGDC TGWLEDFLMG MDSTLEPSAG APPTMSSGTA QPRATATTLI LCCLLIMCLL

241      ICSRHSLTQS HGHHPQSLQP PPHPPLLHPT WLLRRVLWSD SYQIAKRPLS GGHVTRVTLP

301      IIGDDSHSLP CPLALYTINN GAARYSEPLQ VSIS*
Amino acid sequence in FASTA format (without gap) RAET1G*01

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