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Other RAET1 entries

IMGT RPI entry from gene to protein for Homo sapiens RAET1H

IMGT gene name and definition

Chromosomal localization

Locus representation

Homo sapiens RAET1H locus 6q25.1

RAET1H Locus representation

The human RAET1 locus [1] located at 6q25.1 spans 200 kilobases from 150,230 to 150,430 kb (Ensembl, 09/06/2004).

Clones (in blue) are in forward (FWD) orientation on the chromosome. They overlap by about 100 base pairs of complete similarity. An additional 100 base pairs are dissimilar probably for cloning reasons.

Gene exon/intron organization

RAET1H Gene exon/intron organization

Legend:

Number of alleles: 2

IMGT reference alleles

Allele name Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
RAET1H*01 F RP11-244K5 AL583835 [1] gDNA
RAET1H*02 F AB052906 cDNA

IMGT reference sequences (in FASTA format) for the allele(s): RAET1H*01 to RAET1H*02

Other sequences from the literature

Allele name Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
RAET1H*01 F AF304378 cDNA
AY358665 cDNA
AY026825 cDNA (1)
RAET1H*02 F BC034689 cDNA

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
RAET1H*01 NM_025217 NP_079493 246 aa
AF304378 Sw: Q9BZM5 246 aa
AY358665
AY026825
RAET1H*02 AB052906
BC034689
IMGT notes:
  1. (1) Owing to an undertermined nucleotide (m for a or c) at position 369, this sequence could be indifferently assigned to allele *01 or *02.
IMGT references:
  1. [1] Radosavljevic, M. et al., Genomics, 79, 114-123 (2002). PMID: 11827464

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

RAET1H*01: AL583835(g) AF304378(c)

Nucleotide sequence

1        atggcagcag ccgccgctac caagatcctt ctgtgcctcc cgcttctgct cctgctgtcc

61       ggctggtccc gggctgggcg agccgaccct cactctcttt gctatgacat caccgtcatc

121      cctaagttca gacctggacc acggtggtgt gcggttcaag gccaggtgga tgaaaagact

181      tttcttcact atgactgtgg caacaagaca gtcacacctg tcagtcccct ggggaagaaa

241      ctaaatgtca caacggcctg gaaagcacag aacccagtac tgagagaggt ggtggacata

301      cttacagagc aactgcgtga cattcagctg gagaattaca cacccaagga acccctcacc

361      ctgcaggcaa ggatgtcttg tgagcagaaa gctgaaggac acagcagtgg atcttggcag

421      ttcagtttcg atgggcagat cttcctcctc tttgactcag agaagagaat gtggacaacg

481      gttcatcctg gagccagaaa gatgaaagaa aagtgggaga atgacaaggt tgtggccatg

541      tccttccatt acttctcaat gggagactgt ataggatggc ttgaggactt cttgatgggc

601      atggacagca ccctggagcc aagtgcagga gcaccactcg ccatgtcctc aggcacaacc

661      caactcaggg ccacagccac caccctcatc ctttgctgcc tcctcatcat cctcccctgc

721      ttcatcctcc ctggcatctg a
Nucleotide sequence in FASTA format (without gaps) RAET1H*01

Amino acid sequence

1        MAAAAATKIL LCLPLLLLLS GWSRAGRADP HSLCYDITVI PKFRPGPRWC AVQGQVDEKT

61       FLHYDCGNKT VTPVSPLGKK LNVTTAWKAQ NPVLREVVDI LTEQLRDIQL ENYTPKEPLT

121      LQARMSCEQK AEGHSSGSWQ FSFDGQIFLL FDSEKRMWTT VHPGARKMKE KWENDKVVAM

181      SFHYFSMGDC IGWLEDFLMG MDSTLEPSAG APLAMSSGTT QLRATATTLI LCCLLIILPC

241      FILPGI*
Amino acid sequence in FASTA format (without gap) RAET1H*01

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