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Other RAET1 entries

IMGT RPI entry from gene to protein for Homo sapiens RAET1I

IMGT gene name and definition

Chromosomal localization

Locus representation

Homo sapiens RAET1I locus 6q25.1

RAET1I Locus representation

The human RAET1 locus [1] located at 6q25.1 spans 200 kilobases from 150,230 to 150,430 kb (Ensembl, 09/06/2004).

Clones (in blue) are in forward (FWD) orientation on the chromosome. They overlap by about 100 base pairs of complete similarity. An additional 100 base pairs are dissimilar probably for cloning reasons.

Gene exon/intron organization

RAET1I Gene exon/intron organization

Legend:

Number of alleles: 2

IMGT reference alleles

Allele name Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
RAET1I*01 F RP11-472G23 AL355497 [1] gDNA
RAET1I*02 F AF304377 cDNA

IMGT reference sequences (in FASTA format) for the allele(s): RAET1I*01 to RAET1I*02

Other sequences from the literature

Allele name Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
RAET1I*01 F AF346416 cDNA
AF425265 cDNA
RAET1I*02 F AB052907 cDNA

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
RAET1I*01 AF346416 Sw: Q9BZM6 244 aa
AF425265 239 aa (1)
RAET1I*02 AF304377 Tr: Q9BZM6 244 aa
AB052907 244 aa
NM_025218 NP_079494 244 aa
IMGT notes:
  1. (1) in 5', 13 nucleotides or 5 amino acids missing.
IMGT references:
  1. [1] Radosavljevic, M. et al., Genomics, 79, 114-123 (2002). PMID: 11827464

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

RAET1I*01: AL355497(g) AF346416(c)

Nucleotide sequence

1        atggcagcgg ccgccagccc cgcgttcctt ctgtgcctcc cgcttctgca cctgctgtct

61       ggctggtccc gggcaggatg ggtcgacaca cactgtcttt gctatgactt catcatcact

121      cctaagtcca gacctgaacc acagtggtgt gaagttcaag gcctggtgga tgaaaggcct

181      tttcttcact atgactgtgt taaccacaag gccaaagcct ttgcttctct ggggaagaaa

241      gtcaatgtca caaaaacctg ggaagaacaa actgaaacac taagagacgt ggtggatttc

301      cttaaagggc aactgcttga cattcaagtg gagaatttaa tacccattga gcccctcacc

361      ctgcaggcca ggatgtcttg tgagcatgaa gcccatggac acggcagagg atcttggcag

421      ttcctcttca atggacagaa gttcctcctc tttgactcaa acaacagaaa gtggacagca

481      cttcatcctg gagccaagaa gatgacagag aagtgggaga agaacaggga tgtgaccatg

541      ttcttccaga agatttcact gggggattgt aagatgtggc ttgaagaatt tttgatgtac

601      tgggaacaaa tgctggatcc aacaaaacca ccctctctgg ccccaggcac aacccaaccc

661      aaggccatgg ccaccaccct cagtccctgg agccttctca tcatcttcct ctgcttcatt

721      ctagctggca gatga
Nucleotide sequence in FASTA format (without gaps) RAET1I*01

Amino acid sequence

1        MAAAASPAFL LCLPLLHLLS GWSRAGWVDT HCLCYDFIIT PKSRPEPQWC EVQGLVDERP

61       FLHYDCVNHK AKAFASLGKK VNVTKTWEEQ TETLRDVVDF LKGQLLDIQV ENLIPIEPLT

121      LQARMSCEHE AHGHGRGSWQ FLFNGQKFLL FDSNNRKWTA LHPGAKKMTE KWEKNRDVTM

181      FFQKISLGDC KMWLEEFLMY WEQMLDPTKP PSLAPGTTQP KAMATTLSPW SLLIIFLCFI

241      LAGR*
Amino acid sequence in FASTA format (without gap) RAET1I*01

IMGT notes:
S 212 (underlined) is a potential GPI anchor (potential cleavage site ω, ω+1, ω+2 at 212-214).

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