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Other RAET1 entries

IMGT RPI entry from gene to protein for Homo sapiens RAET1L

IMGT gene name and definition

Chromosomal localization

Locus representation

Homo sapiens RAET1L locus 6q25.1

RAET1L Locus representation

The human RAET1 locus [1] located at 6q25.1 spans 200 kilobases from 150,230 to 150,430 kb (Ensembl, 09/06/2004).

Clones (in blue) are in forward (FWD) orientation on the chromosome. They overlap by about 100 base pairs of complete similarity. An additional 100 base pairs are dissimilar probably for cloning reasons.

Gene exon/intron organization

RAET1L Gene exon/intron organization

Legend:

Number of alleles: 2

IMGT reference alleles

Allele name Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
RAET1L*01 F RP11-472G23 AL355497 [1] gDNA
RAET1L*02 F AY039682 cDNA

IMGT reference sequences (in FASTA format) for the allele(s): RAET1L*01 to RAET1L*02

Other sequences from the literature

Allele name Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
RAET1L*02 F NM_130900 cDNA

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
RAET1L*01 AL355497 (1) 246 aa
RAET1L*02 AY039682 Tr: Q8TE74 246 aa
NM_130900 NP_570970 246 aa
IMGT notes:
  1. (1) No accession number, available differs from allele*02 by one nucleotide change (t179>c) at codon M60>T (in G-ALPHA1[D1]) according to the IMGT unique numbering for G-DOMAIN and G-LIKE-DOMAIN.
IMGT references:
  1. [1] Radosavljevic, M. et al., Genomics, 79, 114-123 (2002). PMID: 11827464

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

RAET1L*01: AL355497(g)

Nucleotide sequence

1        atggcagcag ccgccatccc agctttgctt ctgtgcctcc cgcttctgtt cctgctgttc

61       ggctggtccc gggctaggcg agacgaccct cactctcttt gctatgacat caccgtcatc

121      cctaagttca gacctggacc acggtggtgt gcggttcaag gccaggtgga tgaaaagact

181      tttcttcact atgactgtgg caacaagaca gtcacacccg tcagtcccct ggggaagaaa

241      ctaaatgtca caatggcctg gaaagcacag aacccagtac tgagagaggt ggtggacata

301      cttacagagc aactgcttga cattcagctg gagaattaca cacccaagga acccctcacc

361      ctgcaggcaa ggatgtcttg tgagcagaaa gctgaaggac acagcagtgg atcttggcag

421      ttcagtatcg atggacagac cttcctactc tttgactcag agaagagaat gtggacaacg

481      gttcatcctg gagccagaaa gatgaaagaa aagtgggaga atgacaagga tgtggccatg

541      tccttccatt acatctcaat gggagactgc ataggatggc ttgaggactt cttgatgggc

601      atggacagca ccctggagcc aagtgcagga gcaccactcg ccatgtcctc aggcacaacc

661      caactcaggg ccacagccac caccctcatc ctttgctgcc tcctcatcat cctcccctgc

721      ttcatcctcc ctggcatctg a
Nucleotide sequence in FASTA format (without gaps) RAET1L*01

Amino acid sequence

1        MAAAAIPALL LCLPLLFLLF GWSRARRDDP HSLCYDITVI PKFRPGPRWC AVQGQVDEKT

61       FLHYDCGNKT VTPVSPLGKK LNVTMAWKAQ NPVLREVVDI LTEQLLDIQL ENYTPKEPLT

121      LQARMSCEQK AEGHSSGSWQ FSIDGQTFLL FDSEKRMWTT VHPGARKMKE KWENDKDVAM

181      SFHYISMGDC IGWLEDFLMG MDSTLEPSAG APLAMSSGTT QLRATATTLI LCCLLIILPC

241      FILPGI*
Amino acid sequence in FASTA format (without gap) RAET1L*01

IMGT notes:
S 216 (underlined) is a potential GPI anchor (potential cleavage site ω, ω+1, ω+2 at 216-218).

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