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Other RAET1 entries

IMGT RPI entry from gene to protein for Homo sapiens RAET1N

IMGT gene name and definition

Chromosomal localization

Locus representation

Homo sapiens RAET1N locus 6q25.1

RAET1N Locus representation

The human RAET1 locus [1] located at 6q25.1 spans 200 kilobases from 150,230 to 150,430 kb (Ensembl, 09/06/2004).

Clones (in blue) are in forward (FWD) orientation on the chromosome. They overlap by about 100 base pairs of complete similarity. An additional 100 base pairs are dissimilar probably for cloning reasons.

Gene exon/intron organization

RAET1N Gene exon/intron organization

Legend:

Number of alleles: 1

IMGT reference alleles

Allele name Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
RAET1N*01 F RP11-472G23 AL355497 [1] gDNA

IMGT reference sequences (in FASTA format) for the allele(s): RAET1N*01

Other sequences from the literature

Allele name Gene functionality IMGT reference sequences
Clone names Accession numbers Molecule type
RAET1N*01 F AF304379 cDNA
AY027538 cDNA

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
RAET1N*01 AF304379 Sw: Q9BZM4 244 aa
AY027538 234 aa (1)
NM_024518 NP_078794 244 aa
IMGT notes:
  1. (1) in 5', 60 nucleotides or 10 amino acids missing.
IMGT references:
  1. [1] Radosavljevic, M. et al., Genomics, 79, 114-123 (2002). PMID: 11827464

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

RAET1N*01: AL355497(g) AF304379(c)

Nucleotide sequence

1        atggcagcgg ccgccagccc cgcgatcctt ccgcgcctcg cgattcttcc gtacctgcta

61       ttcgactggt ccgggacggg gcgggccgac gctcactctc tctggtataa cttcaccatc

121      attcatttgc ccagacatgg gcaacagtgg tgtgaggtcc agagccaggt ggatcagaag

181      aattttctct cctatgactg tggcagtgac aaggtcttat ctatgggtca cctagaagag

241      cagctgtatg ccacagatgc ctggggaaaa caactggaaa tgctgagaga ggtggggcag

301      aggctcagac tggaactggc tgacactgag ctggaggatt tcacacccag tggacccctc

361      acgctgcagg tcaggatgtc ttgtgagtgt gaagccgatg gatacatccg tggatcttgg

421      cagttcagct tcgatggacg gaagttcctc ctctttgact caaacaacag aaagtggaca

481      gtggttcacg ctggagccag gcggatgaaa gagaagtggg agaaggatag cggactgacc

541      accttcttca agatggtctc aatgagagac tgcaagagct ggcttaggga cttcctgatg

601      cacaggaaga agaggctgga acccacagca ccacccacca tggccccagg cttagctcaa

661      cccaaagcca tagccaccac cctcagtccc tggagcttcc tcatcatcct ctgcttcatc

721      ctccctggca tctga
Nucleotide sequence in FASTA format (without gaps) RAET1N*01

Amino acid sequence

1        MAAAASPAIL PRLAILPYLL FDWSGTGRAD AHSLWYNFTI IHLPRHGQQW CEVQSQVDQK

61       NFLSYDCGSD KVLSMGHLEE QLYATDAWGK QLEMLREVGQ RLRLELADTE LEDFTPSGPL

121      TLQVRMSCEC EADGYIRGSW QFSFDGRKFL LFDSNNRKWT VVHAGARRMK EKWEKDSGLT

181      TFFKMVSMRD CKSWLRDFLM HRKKRLEPTA PPTMAPGLAQ PKAIATTLSP WSFLIILCFI

241      LPGI*
Amino acid sequence in FASTA format (without gap) RAET1N*01

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