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Other CD2 Family entries

IMGT RPI entry from gene to protein for Homo sapiens SLAMF1

Citing IMGT RPI entry for SLAMF1

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

SLAMF1 Gene exon/intron organization

Legend:

Number of alleles: 2

IMGT reference alleles

Allele names Gene functionality IMGT reference sequences
Exons Accession numbers Molecule type
SLAMF1*01 F EX1-7 AL121985[1] gDNA
SLAMF1*02 F EX1-7 AY040554 cDNA (1)

IMGT reference sequences (in FASTA format) for the allele(s): SLAMF1*01 to SLAMF1*02

Other sequences from the literature

Allele names Gene functionality IMGT reference sequences
Exons Accession numbers Molecule type
SLAMF1*01 F EX1-7 AL138930 gDNA
EX2 AF252303 gDNA (2)
EX3 AF252304
EX4 AF252305
EX5-6 AF252306
EX1-7 U33017 cDNA
EX1-2 BC067847 cDNA (3) Splicing B
EX1-2, EX8 BC012602 cDNA (4) Splicing C

Corresponding protein database accession numbers

Allele names Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
SLAMF1*01 AL121985 Q13291 335 aa 1
NM_003037 NP_003028 335 aa 1
BC067847 Tr: Q6NVW8 148 aa 2
BC01262 Tr: Q96QJ2 144 aa 3
SLAMF1*02 AY040554 Tr: Q96QR3 335 aa 1
IMGT notes:
  1. (1) In EX5 c146>t; P49>S.
  2. (2) Partial. No EX1
  3. (3) Splicing B (148 aa). EX2 has no 3' splice site and terminate 10 codons beyond the normal 3' splice site. No EX3-6.
  4. (4) Splicing C (144 aa). EX2 has a alternative splice site 14 codons up stream to the normal 3' splice site and utilize novel exon (EX8) of 20 codons length.
IMGT references:
  1. [1] Cocks, B.G. et al, Nature 376, 260-263 (1995). PMID: 7617038

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

SLAMF1*01: AL121985(g)

Nucleotide sequence

1        atggatccca aggggctcct ctccttgacc ttcgtgctgt ttctctccct ggcttttggg

61       gcaagctacg gaacaggtgg gcgcatgatg aactgcccaa agattctccg gcagttggga

121      agcaaagtgc tgctgcccct gacatatgaa aggataaata agagcatgaa caaaagcatc

181      cacattgtcg tcacaatggc aaaatcactg gagaacagtg tcgagaacaa aatagtgtct

241      cttgatccat ccgaagcagg ccctccacgt tatctaggag atcgctacaa gttttatctg

301      gagaatctca ccctggggat acgggaaagc aggaaggagg atgagggatg gtaccttatg

361      accctggaga aaaatgtttc agttcagcgc ttttgcctgc agttgaggct ttatgagcag

421      gtctccactc cagaaattaa agttttaaac aagacccagg agaacgggac ctgcaccttg

481      atactgggct gcacagtgga gaagggggac catgtggctt acagctggag tgaaaaggcg

541      ggcacccacc cactgaaccc agccaacagc tcccacctcc tgtccctcac cctcggcccc

601      cagcatgctg acaatatcta catctgcacc gtgagcaacc ctatcagcaa caattcccag

661      accttcagcc cgtggcccgg atgcaggaca gacccctcag aaacaaaacc atgggcagtg

721      tatgctgggc tgttaggggg tgtcatcatg attctcatca tggtggtaat actacagttg

781      agaagaagag gtaaaacgaa ccattaccag acaacagtgg aaaaaaaaag ccttacgatc

841      tatgcccaag tccagaaacc aggtcctctt cagaagaaac ttgactcctt cccagctcag

901      gacccttgca ccaccatata tgttgctgcc acagagcctg tcccagagtc tgtccaggaa

961      acaaattcca tcacagtcta tgctagtgtg acacttccag agagctga
Nucleotide sequence in FASTA format (without gaps) SLAMF1*01

Amino acid sequence

1        MDPKGLLSLT FVLFLSLAFG ASYGTGGRMM NCPKILRQLG SKVLLPLTYE RINKSMNKSI

61       HIVVTMAKSL ENSVENKIVS LDPSEAGPPR YLGDRYKFYL ENLTLGIRES RKEDEGWYLM

121      TLEKNVSVQR FCLQLRLYEQ VSTPEIKVLN KTQENGTCTL ILGCTVEKGD HVAYSWSEKA

181      GTHPLNPANS SHLLSLTLGP QHADNIYICT VSNPISNNSQ TFSPWPGCRT DPSETKPWAV

241      YAGLLGGVIM ILIMVVILQL RRRGKTNHYQ TTVEKKSLTI YAQVQKPGPL QKKLDSFPAQ

301      DPCTTIYVAA TEPVPESVQE TNSITVYASV TLPES*
Amino acid sequence in FASTA format (without gap) SLAMF1*01

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