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Other CD2 Family entries

IMGT RPI entry from gene to protein for Homo sapiens SLAMF6

Citing IMGT RPI entry for SLAMF6

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

SLAMF6 Gene exon/intron organization

Legend:

Number of alleles: 1

IMGT reference alleles

Allele names Gene functionality IMGT reference sequences
Exons Accession numbers Molecule type
SLAMF6*01 F EX1-8 AJ306388 cDNA

IMGT reference sequences (in FASTA format) for the allele(s): SLAMF6*01

Other sequences from the literature

Allele names Gene functionality IMGT reference sequences
Exons Accession numbers Molecule type
SLAMF6*01 F EX1-8 AL832854 cDNA
AJ306388 cDNA
AY358159 cDNA
AL138930 gDNA splcing B (1)
AJ277141 cDNA
AK125624 cDNA
NM_052931 cDNA
BC113893 cDNA
EX1-5 BC090928 cDNA splicing C (2)

Corresponding protein database accession numbers

SLAMF6 Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
SLAMF6*01 AJ306388 332 aa 1
NM_052931 NP_443163 331 aa 2
BC090928 Tr:Q5BKU7 271 aa 3
IMGT notes:
  1. (1) Splicing B (332 aa). In EX6, it utilizes an alternative 5' splice site 1 codon after the normal splice site.
  2. (2) Splicing C (271 aa). In EX5 there is no splice site and ends 6 codons beyond the normal 3' splice site.
IMGT references:
  1. [1] Bottino C. et al., J. Exp. Med. 194 (3), 235-246 (2001) . PMID: 11489943

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

SLAMF6*01: AL138930(g) AJ277141(c)

Nucleotide sequence

1        atgttgtggc tgttccaatc gctcctgttt gtcttctgct ttggcccagg gaatgtagtt

61       tcacaaagca gcttaacccc attgatggtg aacgggattc tgggggagtc agtaactctt

121      cccctggagt ttcctgcagg agagaaggtc aacttcatca cttggctttt caatgaaaca

181      tctcttgcct tcatagtacc ccatgaaacc aaaagtccag aaatccacgt gactaatccg

241      aaacagggaa agcgactgaa cttcacccag tcctactccc tgcaactcag caacctgaag

301      atggaagaca caggctctta cagagcccag atatccacaa agacctctgc aaagctgtcc

361      agttacactc tgaggatatt aagacaactg aggaacatac aagttaccaa tcacagtcag

421      ctatttcaga atatgacctg tgagctccat ctgacttgct ctgtggagga tgcagatgac

481      aatgtctcat tcagatggga ggccttggga aacacacttt caagtcagcc aaacctcact

541      gtctcctggg accccaggat ttccagtgaa caggactaca cctgcatagc agagaatgct

601      gtcagtaatt tatccttctc tgtctctgcc cagaagcttt gcgaagatgt taaaattcaa

661      tatacagata ccaaaatgat tctgtttatg gtttctggga tatgcatagt cttcggtttc

721      atcatactgc tgttacttgt tttgaggaaa agaagagatt ccctatcttt gtctactcag

781      cgaacacagg gccccgcaga gtccgcaagg aacctagagt atgtttcagt gtctccaacg

841      aacaacactg tgtatgcttc agtcactcat tcaaacaggg aaacagaaat ctggacacct

901      agagaaaatg atactatcac aatttactcc acaattaatc attccaaaga gagtaaaccc

961      actttttcca gggcaactgc ccttgacaat gtcgtgtaa
Nucleotide sequence in FASTA format (without gaps) SLAMF6*01

Amino acid sequence

1        MLWLFQSLLF VFCFGPGNVV SQSSLTPLMV NGILGESVTL PLEFPAGEKV NFITWLFNET

61       SLAFIVPHET KSPEIHVTNP KQGKRLNFTQ SYSLQLSNLK MEDTGSYRAQ ISTKTSAKLS

121      SYTLRILRQL RNIQVTNHSQ LFQNMTCELH LTCSVEDADD NVSFRWEALG NTLSSQPNLT

181      VSWDPRISSE QDYTCIAENA VSNLSFSVSA QKLCEDVKIQ YTDTKMILFM VSGICIVFGF

241      IILLLLVLRK RRDSLSLSTQ RTQGPAESAR NLEYVSVSPT NNTVYASVTH SNRETEIWTP

301      RENDTITIYS TINHSKESKP TFSRATALDN VV*
Amino acid sequence in FASTA format (without gap) SLAMF6*01

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