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Other TREM entries

IMGT RPI entry from gene to protein for Homo sapiens TREM1

Citing IMGT RPI entry for TREM1

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

TREM1 Gene exon/intron organization

Legend:

Number of alleles: 1

IMGT reference alleles

Allele name Gene functionality IMGT reference sequences
Clone names Exons Accession numbers Molecule type
TREM1*01 F RP1-229K20 EX1-4 AL391903 gDNA

IMGT reference sequences (in FASTA format) for the allele(s): TREM1*01

Other sequences from the literature

Allele name Gene functionality IMGT reference sequences
Clone names Exons Accession numbers Molecule type
TREM1*01 F EX1-4 AF287008 cDNA
EX1-4 BC017773

Corresponding protein database accession numbers

Allele name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
TREM1*01 AF287008 Q9NP99 234 aa
AY074783 AAL74018 150 aa TREM1sv*01 (1)
BC017773 Q9NP99 234 aa
IMGT notes:
  1. (1) Splicing variant without exon 3 leading to a modified ORF and premature codon-stop.
IMGT references:
  1. [1] Allcock R.J. et al., Eur J Immunol, 33, 567-577 (2003). PMID: 12645956

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

TREM1*01: AL391903(g)

Nucleotide sequence

1        atgaggaaga ccaggctctg ggggctgctg tggatgctct ttgtctcaga actccgagct

61       gcaactaaat taactgagga aaagtatgaa ctgaaagagg ggcagaccct ggatgtgaaa

121      tgtgactaca cgctagagaa gtttgccagc agccagaaag cttggcagat aataagggac

181      ggagagatgc ccaagaccct ggcatgcaca gagaggcctt caaagaattc ccatccagtc

241      caagtgggga ggatcatact agaagactac catgatcatg gtttactgcg cgtccgaatg

301      gtcaaccttc aagtggaaga ttctggactg tatcagtgtg tgatctacca gcctcccaag

361      gagcctcaca tgctgttcga tcgcatccgc ttggtggtga ccaagggttt ttcagggacc

421      cctggctcca atgagaattc tacccagaat gtgtataaga ttcctcctac caccactaag

481      gccttgtgcc cactctatac cagccccaga actgtgaccc aagctccacc caagtcaact

541      gccgatgtct ccactcctga ctctgaaatc aaccttacaa atgtgacaga tatcatcagg

601      gttccggtgt tcaacattgt cattctcctg gctggtggat tcctgagtaa gagcctggtc

661      ttctctgtcc tgtttgctgt cacgctgagg tcatttgtac cctag
Nucleotide sequence in FASTA format (without gaps) TREM1*01

Amino acid sequence

1        MRKTRLWGLL WMLFVSELRA ATKLTEEKYE LKEGQTLDVK CDYTLEKFAS SQKAWQIIRD

61       GEMPKTLACT ERPSKNSHPV QVGRIILEDY HDHGLLRVRM VNLQVEDSGL YQCVIYQPPK

121      EPHMLFDRIR LVVTKGFSGT PGSNENSTQN VYKIPPTTTK ALCPLYTSPR TVTQAPPKST

181      ADVSTPDSEI NLTNVTDIIR VPVFNIVILL AGGFLSKSLV FSVLFAVTLR SFVP*
Amino acid sequence in FASTA format (without gap) TREM1*01

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